BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0012.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_844857.1| ABC transporter, ATP-binding protein [Bacillus ... 192 7e-48 ref|NP_978822.1| ABC transporter, ATP-binding protein [Bacillus ... 187 2e-46 ref|NP_350168.1| ABC-type transporter, ATPase component [Clostri... 171 1e-41 ref|NP_786123.1| ABC transporter, ATP-binding protein [Lactobaci... 171 1e-41 ref|NP_469763.1| similar to ABC transporter, ATP-binding protein... 168 8e-41 >ref|NP_844857.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26343.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 256 Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 149/249 (59%), Gaps = 2/249 (0%) Query: 6 IIQTKNLCKTYST-GSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTA 64 I++ K + KTYS G+ +H ++NIDL +++G+F +MG SGSGKSTLLY +SG+D +++ Sbjct: 7 ILEVKQVNKTYSMDGNANYHVLKNIDLEVYEGEFVSVMGPSGSGKSTLLYNISGMDQMSS 66 Query: 65 GEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGT-PKREV 123 G V + L E+ELA R +IG+I+Q SNL+ +L LF+NI L Y+A K+ V Sbjct: 67 GSVKIDSKELSCMKEEELAKLRLTEIGFIFQQSNLLRNLNLFDNIILSAYLAKCESKKIV 126 Query: 124 KQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGV 183 +R L LM+ M I E SGG N P +IFADEPTG+LN Sbjct: 127 NKRALELMENMGISDIASHYITEASGGQLQRVSICRALINNPNIIFADEPTGALNLKSTE 186 Query: 184 AVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDREAL 243 V+ +L ++N G +I++VTHD+K A + R++F+ DG++ ++ D L+ RE Sbjct: 187 EVMQILLNINRDGTTIMLVTHDVKVAAKTERILFMADGEIVSEIQLGKLRNDDLKAREEK 246 Query: 244 IFSYISERG 252 + ++++ G Sbjct: 247 LLNWLAVLG 255 >ref|NP_978822.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41430.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 253 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 2/249 (0%) Query: 6 IIQTKNLCKTYST-GSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTA 64 I++ K + KTYS G+ +H ++NIDL +++G+F +MG SGSGKSTLLY +SG+D +++ Sbjct: 4 IVEVKQVNKTYSIDGNANYHVLKNIDLEVYEGEFVSVMGPSGSGKSTLLYNISGMDQMSS 63 Query: 65 GEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGT-PKREV 123 G V + + E+ LA R +IG+I+Q SNL+ +L LF+NI L Y+A K+ V Sbjct: 64 GSVKIGGKEISCMKEEALAKLRLTEIGFIFQQSNLLRNLNLFDNIILSAYLAKCESKKIV 123 Query: 124 KQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGV 183 +R L+LM M I E SGG N P +IFADEPTG+LN Sbjct: 124 NKRALALMGKMGISDIASHYITEASGGQLQRVSICRALINNPNIIFADEPTGALNLKSTE 183 Query: 184 AVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDREAL 243 V+ +L ++N G +I++VTHD+K A + R++F+ DG++ ++ D L+ RE Sbjct: 184 EVMQILLNINRDGTTIMLVTHDVKVAAKTERVLFMADGEIVSEIQLGKLRNDDLKAREEK 243 Query: 244 IFSYISERG 252 + +++ G Sbjct: 244 LLKWLAILG 252 >ref|NP_350168.1| ABC-type transporter, ATPase component [Clostridium acetobutylicum] pir||A97340 ABC-type transporter, ATPase component CAC3585 [imported] - Clostridium acetobutylicum gb|AAK81508.1| ABC-type transporter, ATPase component [Clostridium acetobutylicum] Length = 226 Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 6/221 (2%) Query: 6 IIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAG 65 +I+ KN+ K Y G E A+ N++L I G+F I+G SGSGKSTL++L+ GLD+ T+G Sbjct: 1 MIEVKNVSKVYKMGKETVTALNNVNLKIHDGEFVAIVGPSGSGKSTLMHLVGGLDTPTSG 60 Query: 66 EVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALP---GYVAGTPKRE 122 V + + R +KE++ +R + IG+++Q NL T EN+ +P + G +RE Sbjct: 61 SVRVDNKDISRLKDKEMSKYRNRTIGFVFQAFNLENTQTALENVMMPLIFAGIGGNARRE 120 Query: 123 VKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQG 182 +R L ++ D + R P+E+SGG N P++IFADEPTG+L+ G Sbjct: 121 KAKRALEMVGLG--DKIKHR-PSEMSGGQRQRVSIARALVNEPQIIFADEPTGNLDSKNG 177 Query: 183 VAVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKV 223 ++ LL D+N G +I+MVTH+++ A +A RLI I+DG+V Sbjct: 178 ALIMKLLEDLNEKGYTIIMVTHNMEEAKKAKRLIMIKDGQV 218 >ref|NP_786123.1| ABC transporter, ATP-binding protein [Lactobacillus plantarum WCFS1] emb|CAD64974.1| ABC transporter, ATP-binding protein [Lactobacillus plantarum WCFS1] Length = 252 Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 2/230 (0%) Query: 1 MTKTAIIQTKNLCKTY-STGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGL 59 MT T I+ +L KTY GS+Q+ A++ I+ N+ G+F IMG SGSGK+TLL +L+ L Sbjct: 1 MTTTPIMTVSDLHKTYGKAGSKQYEALKGINFNVQPGEFVGIMGASGSGKTTLLNMLATL 60 Query: 60 DSVTAGEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTP 119 D T+GEV QQ + +LA FRA++IG+I+Q+ NL+ +T +ENIALP + TP Sbjct: 61 DQPTSGEVTIHQQPITHLKGNQLADFRAKEIGFIFQDFNLLETMTAYENIALPLSLQNTP 120 Query: 120 KREVKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNY 179 +++K V + + I+ P E+SGG N P ++F DEPTG+L+ Sbjct: 121 VKKIKPAVEKVAHQLGIEEFLSNYPNELSGGQKQRVAAARALINDPAILFGDEPTGALDS 180 Query: 180 DQGVAVLDLLTDMNTG-GQSIVMVTHDIKAACRANRLIFIRDGKVGGMLE 228 +LDL T +N SI++VTHD +A R++FI+DG++G L+ Sbjct: 181 KSARELLDLFTKINQERAVSILLVTHDPFSASFCQRILFIKDGRIGQELK 230 >ref|NP_469763.1| similar to ABC transporter, ATP-binding protein [Listeria innocua] pir||AC1485 ABC transporter, ATP-binding protein homolog lin0418 [imported] - Listeria innocua (strain Clip11262) emb|CAC95651.1| lin0418 [Listeria innocua] Length = 224 Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 134/218 (61%) Query: 6 IIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAG 65 +IQ N+ K+Y G A+ +I L I +G+F I+G SGSGKSTL+ +L LD T G Sbjct: 1 MIQLFNISKSYQMGENTIKALDDISLQISEGEFLAIIGPSGSGKSTLMNILGILDKATVG 60 Query: 66 EVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVKQ 125 E Y ++ L R ++++++ R +KIG+I+Q NL+P LT FEN+ LP G K K+ Sbjct: 61 EYYLNKKNLMRVSDRKISKIRNRKIGFIFQQFNLMPRLTAFENVELPLVYRGVGKAVRKR 120 Query: 126 RVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVAV 185 VL ++ + + ++ LPA++SGG +PE+I ADEPTG+L+ G V Sbjct: 121 VVLKSLERVGLLDKKKHLPAQLSGGQQQRIAIARAIAGSPEIILADEPTGALDSKTGEEV 180 Query: 186 LDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKV 223 + LL +++ G +++M+THD + A +A R+I I+DGK+ Sbjct: 181 MSLLKEIHREGNTLIMITHDQEIAQQAERIIEIKDGKL 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 345,834,825 Number of extensions: 13488816 Number of successful extensions: 88167 Number of sequences better than 1.0e-05: 13582 Number of HSP's gapped: 77706 Number of HSP's successfully gapped: 14105 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)