BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0010.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_847118.1| DNA-binding response regulator [Bacillus anthra... 223 3e-57 ref|NP_658699.1| REC, cheY-homologous receiver domain [Bacillus ... 223 3e-57 ref|NP_834371.1| Two-component response regulator [Bacillus cere... 223 3e-57 ref|ZP_00103861.1| COG0745: Response regulators consisting of a ... 218 9e-56 pir||T31680 bacR protein - Bacillus licheniformis >gi|4481749|gb... 217 2e-55 >ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 229 Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 150/216 (69%), Gaps = 1/216 (0%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + + +DY+ + + V + +G GL++ D IILDIMLP NG E+C+QIR I Sbjct: 14 AELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFEICKQIRAIKDI 73 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGM-GNIPGHGDLI 150 PIL++SA+ D DK+ GLG GADDY+TKPFS SELVAR++AH+ R E + GN+ D + Sbjct: 74 PILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYERLLGNVSKQRDTL 133 Query: 151 SLGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDE 210 + ++ID++A K +N +E+A + KEF+LL F + NQV +K QL ++IWG S GD Sbjct: 134 YIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLFERIWGLDSAGDL 193 Query: 211 STITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 +T+ V+IR+LREK+E DP+ P YI+TVWG GY+FN+ Sbjct: 194 ATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >ref|NP_658699.1| REC, cheY-homologous receiver domain [Bacillus anthracis A2012] Length = 232 Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 150/216 (69%), Gaps = 1/216 (0%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + + +DY+ + + V + +G GL++ D IILDIMLP NG E+C+QIR I Sbjct: 17 AELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFEICKQIRAIKDI 76 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGM-GNIPGHGDLI 150 PIL++SA+ D DK+ GLG GADDY+TKPFS SELVAR++AH+ R E + GN+ D + Sbjct: 77 PILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYERLLGNVSKQRDTL 136 Query: 151 SLGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDE 210 + ++ID++A K +N +E+A + KEF+LL F + NQV +K QL ++IWG S GD Sbjct: 137 YIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLFERIWGLDSAGDL 196 Query: 211 STITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 +T+ V+IR+LREK+E DP+ P YI+TVWG GY+FN+ Sbjct: 197 ATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 232 >ref|NP_834371.1| Two-component response regulator [Bacillus cereus ATCC 14579] gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 229 Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 150/216 (69%), Gaps = 1/216 (0%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + + +DY+ + + V + +G GL++ D IILDIMLP NG E+C+QIR I Sbjct: 14 AELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFEICKQIRAVKDI 73 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGM-GNIPGHGDLI 150 PIL++SA+ D DK+ GLG GADDY+TKPFS SELVAR++AH+ R E + GN+ D + Sbjct: 74 PILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYERLLGNVSKQRDTL 133 Query: 151 SLGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDE 210 + ++ID++A K +N +E+A + KEF+LL F + NQV +K QL ++IWG S GD Sbjct: 134 YIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLFERIWGLDSAGDL 193 Query: 211 STITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 +T+ V+IR+LREK+E DP+ P YI+TVWG GY+FN+ Sbjct: 194 ATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >ref|ZP_00103861.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Desulfitobacterium hafniense] Length = 233 Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 100/215 (46%), Positives = 153/215 (71%), Gaps = 2/215 (0%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + ++KD++ + Y+ +A +G + L L P +ILDIM+P +G+E+CR+IR ++ + Sbjct: 16 AELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGMEVCRRIRAESNV 75 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGMGNIP-GHGDLI 150 PI++LSA+ ++ DK+LGLG GADDY+ KPFS E+VAR++A LRR + M +P L+ Sbjct: 76 PIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFK-MSAVPEPKTRLL 134 Query: 151 SLGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDE 210 S L ID + Y+ L G+ L L+ KEFELL FLA H NQV ++ Q+ +WG+ GD Sbjct: 135 SYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFANVWGFNESGDL 194 Query: 211 STITVYIRRLREKLEADPSSPSYIKTVWGVGYKFN 245 +T+TV+I++LREK+E+D ++P++IKTVWGVGYKF+ Sbjct: 195 NTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFS 229 >pir||T31680 bacR protein - Bacillus licheniformis gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/213 (49%), Positives = 150/213 (70%), Gaps = 2/213 (0%) Query: 34 ILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRIPI 93 +LK Y++ + Y+V +A +G D LRL E +ILD+M+P +GIE+CR++R+ T +PI Sbjct: 18 LLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIEVCRRMRNHTNVPI 77 Query: 94 LILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGMGNIPGHGD--LIS 151 L+L+A+ + DK+LGL GADDY+TKPFS++E++ARI+A LRR +G+ + LI Sbjct: 78 LMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVLGSESRSDEQSLIQ 137 Query: 152 LGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDES 211 LTID K Y T GQE++L+AKEFELL F A + QVF+K+QL W D++ Sbjct: 138 FKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLFRNAWSDQYIEDDN 197 Query: 212 TITVYIRRLREKLEADPSSPSYIKTVWGVGYKF 244 T+ V+IRRLR+K+E DPS P +I+TVWG+GYKF Sbjct: 198 TVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,163,638 Number of extensions: 13445423 Number of successful extensions: 45206 Number of sequences better than 1.0e-05: 4120 Number of HSP's gapped: 42753 Number of HSP's successfully gapped: 4137 Length of query: 247 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 125 Effective length of database: 425,995,500 Effective search space: 53249437500 Effective search space used: 53249437500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)