BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0273.0006.p
         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00031596.1| COG0716: Flavodoxins [Burkholderia fungorum]        59   5e-08

>ref|ZP_00031596.1| COG0716: Flavodoxins [Burkholderia fungorum]
          Length = 186

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 2   NIAVISYSFTGNNKSLAGSVAKELSAEHIQISEPKTRTMGSIA-----LDMMFSRTPQVQ 56
            + V+ +S TG  ++LA ++A+ LSA+  +I +   R  G++      +D    R  ++ 
Sbjct: 20  RVLVVFFSRTGTTRTLASTLARMLSADMEEICDCTERR-GALGYMRCLVDSWRKRPAEIV 78

Query: 57  PAPETMESYDLLLFFGPVWMGHVAAPLRAYLKYLKSHPQRYGFLSISGGADGSNPKLTGD 116
           PA      YDL++   PVW G V+AP+RAYL   +   +   F    GG  G       +
Sbjct: 79  PAGLDTAQYDLVVVGTPVWAGSVSAPVRAYLLENRWKFRHVAFFCSLGGLGGQTA--FDE 136

Query: 117 LRKRAGADPAVLIDLHIADL 136
           +R  AG  P     +  A++
Sbjct: 137 MRDLAGKAPVAQCKVRAAEV 156


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 258,250,338
Number of extensions: 10118197
Number of successful extensions: 21822
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 21826
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 56
Effective length of database: 439,570,995
Effective search space: 24615975720
Effective search space used: 24615975720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)