BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0003.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||A56641 probable membrane transport protein - Clostridium pe... 96 2e-19 ref|NP_384221.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPOR... 95 5e-19 gb|EAH03447.1| unknown [environmental sequence] 94 8e-19 ref|ZP_00057847.1| COG0395: ABC-type sugar transport system, per... 94 1e-18 ref|NP_682172.1| sugar transport system permease protein [Thermo... 92 3e-18 >pir||A56641 probable membrane transport protein - Clostridium perfringens emb|CAA46887.1| unnamed protein product [Clostridium perfringens] Length = 275 Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 83/127 (65%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTML 83 ++P +W++ +SL MG+ ++PP P + N+SE +LPFG++++NT +++IF ++ Sbjct: 24 IVPFLWMVLTSLKTMGEATQVPPKIFPSKPMYENYSEVSRLLPFGKFYMNTIIMLIFRVV 83 Query: 84 GVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPLI 143 G + +++AY+FAR+++ G+ + F L+L MM+P + ++P F+ KLGL N+ L+ Sbjct: 84 GSVFFSAMAAYAFARLNFPGKKIFFALVLFQMMIPAQIFIVPQFLLVQKLGLLNTISALV 143 Query: 144 APACSAA 150 P +A Sbjct: 144 IPGIVSA 150 >ref|NP_384221.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41502.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 295 Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 79/124 (63%), Gaps = 3/124 (2%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILP--FGRYFINTTVIVIFT 81 + PL+W+I +S+ +IF +W P F ++ L FGR+F N+ VI + T Sbjct: 40 IYPLLWMISASVRPEDEIFASTSLW-PSSVDFSSYVRGWFGLDVSFGRFFWNSLVIAVLT 98 Query: 82 MLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIP 141 ++G +V CS++AY+FAR+ + GRN F ++L +MM+PY VTLIP ++ + LG N+F+P Sbjct: 99 VVGNVVACSLAAYAFARLRFAGRNFWFAIMLGTMMIPYHVTLIPQYVLFLDLGWVNTFLP 158 Query: 142 LIAP 145 L+ P Sbjct: 159 LVVP 162 >gb|EAH03447.1| unknown [environmental sequence] Length = 258 Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 3/129 (2%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTIL--PFGRYFINTTVIVIFT 81 L PL+W++ SS IF +W P F + + L PFG++F+N+ V+ + Sbjct: 46 LYPLLWMLASSFKPDSDIFGSASLW-PSSFSLEAYRRGWSGLQVPFGQFFLNSLVVSLSC 104 Query: 82 MLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIP 141 ++G +++CS++AY+FAR+++RG+ L F L+L ++MLPY VTLIP ++ + LG +F+P Sbjct: 105 VIGNVLSCSLTAYAFARLTFRGQKLWFALMLGTLMLPYHVTLIPQYVLFLNLGWVGTFLP 164 Query: 142 LIAPACSAA 150 LI P AA Sbjct: 165 LIVPKFLAA 173 >ref|ZP_00057847.1| COG0395: ABC-type sugar transport system, permease component [Thermobifida fusca] Length = 292 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 3/128 (2%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTIL--PFGRYFINTTVIVIFT 81 L PL+W++ SS +IF P + IP F GN++E T L PF Y +N+ ++V Sbjct: 38 LYPLLWMLSSSFKPTEEIFRDPSL-IPSTFMPGNYTEGWTALQHPFHHYLLNSAIVVAGA 96 Query: 82 MLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIP 141 ++G L+ CS++AY+FAR+ + G+ L F ++L ++MLP V ++P +I ++KL N+F P Sbjct: 97 IIGNLLGCSMAAYAFARLEFFGKKLFFAIMLMTIMLPIHVVIVPQYILFAKLDWINTFYP 156 Query: 142 LIAPACSA 149 LI P A Sbjct: 157 LIVPKLLA 164 >ref|NP_682172.1| sugar transport system permease protein [Thermosynechococcus elongatus BP-1] dbj|BAC08934.1| sugar transport system permease protein [Thermosynechococcus elongatus BP-1] Length = 272 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 1/128 (0%) Query: 24 LLPLIWLIRSSLMDMGQ-IFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTM 82 LLPL+WL ++ + IF PP W P NF PFG+Y N+T++ + T+ Sbjct: 20 LLPLVWLTSTAFKSANEDIFAFPPRWFPAEPTLANFVTVWQTNPFGQYLFNSTLVAVLTV 79 Query: 83 LGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPL 142 L+T +++AY AR+S+RGR ++F +L+++M+P+ + +IP FI LGL N+++ + Sbjct: 80 GCNLLTSALAAYPLARLSFRGREVIFTAILATIMIPFQIIMIPLFILAVHLGLRNTYLGM 139 Query: 143 IAPACSAA 150 I P+ ++A Sbjct: 140 ILPSLASA 147 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 201,443,352 Number of extensions: 7151552 Number of successful extensions: 25012 Number of sequences better than 1.0e-05: 437 Number of HSP's gapped: 24989 Number of HSP's successfully gapped: 437 Length of query: 151 Length of database: 757,237,578 Length adjustment: 110 Effective length of query: 41 Effective length of database: 458,576,688 Effective search space: 18801644208 Effective search space used: 18801644208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 120 (50.8 bits)