BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0022.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830536.1| Regulatory protein TENI [Bacillus cereus ATCC 1... 112 4e-24 ref|NP_843254.1| regulatory protein TenI [Bacillus anthracis str... 109 4e-23 ref|NP_654677.1| TMP-TENI, Thiamine monophosphate synthase/TENI ... 109 4e-23 ref|NP_977123.1| regulatory protein TenI [Bacillus cereus ATCC 1... 109 4e-23 ref|NP_389048.1| transcriptional regulator [Bacillus subtilis] >... 89 5e-17 >ref|NP_830536.1| Regulatory protein TENI [Bacillus cereus ATCC 14579] gb|AAP07737.1| Regulatory protein TENI [Bacillus cereus ATCC 14579] Length = 208 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 89/184 (48%) Query: 3 EIHLISDGKLEPGRFINLAAAVYPLVDYIHLREKHRPALELLDMAKQLLLAGVPASSLVI 62 E+H+IS+G + +N+A + +DY+H+RE+ + EL + + LL+ G PAS +VI Sbjct: 6 ELHVISNGHMPFEELVNVAMQIESEIDYLHIREREKSTKELYEGVESLLMEGFPASKIVI 65 Query: 63 NDRLDXXXXXXXXXXXXXWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGLFG 122 NDR+D + D ++G Sbjct: 66 NDRIDIAILLNIPRVQLGYRSTDVKSVKEKFSYLHVGYSVHSLDEAIVAFKNGADSLVYG 125 Query: 123 HVFPTACKPGQQERGLGLLAEAVRRSRMPLIAIGGIEPGNAAQVIRQGAAGIAVMSGICS 182 HVFPT CK G RGL +++ R +P+ AIGGI P N V+ G +GIAVMSGI S Sbjct: 126 HVFPTDCKKGVPARGLEEISDIARCLSIPITAIGGITPENTVDVLTNGVSGIAVMSGIVS 185 Query: 183 TEDP 186 + +P Sbjct: 186 SSNP 189 >ref|NP_843254.1| regulatory protein TenI [Bacillus anthracis str. Ames] gb|AAP24740.1| regulatory protein TenI [Bacillus anthracis str. Ames] Length = 206 Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%) Query: 3 EIHLISDGKLEPGRFINLAAAVYPLVDYIHLREKHRPALELLDMAKQLLLAGVPASSLVI 62 E+H+IS+G + +++A + +DY+H+RE+ + EL + + LL G PAS LVI Sbjct: 4 ELHVISNGHMSFEELVSVAMQIESEIDYLHIREREKSTKELYEGVESLLKKGFPASKLVI 63 Query: 63 NDRLDXXXXXXXXXXXXXWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGLFG 122 NDR+D + D ++G Sbjct: 64 NDRIDIAILLNIPRVQLGYRSTDVRSVKEKFSYLHVGYSVHSLEEAIEAFKNGADSLVYG 123 Query: 123 HVFPTACKPGQQERGLGLLAEAVRRSRMPLIAIGGIEPGNAAQVIRQGAAGIAVMSGICS 182 HVFPT CK G RGL +++ R +P+IAIGGI P N ++ +GIAVMSGI S Sbjct: 124 HVFPTECKKGVPARGLEEISDIARSLSIPIIAIGGITPENTKDILASEVSGIAVMSGIVS 183 Query: 183 TEDP 186 + +P Sbjct: 184 SSNP 187 >ref|NP_654677.1| TMP-TENI, Thiamine monophosphate synthase/TENI [Bacillus anthracis A2012] Length = 207 Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%) Query: 3 EIHLISDGKLEPGRFINLAAAVYPLVDYIHLREKHRPALELLDMAKQLLLAGVPASSLVI 62 E+H+IS+G + +++A + +DY+H+RE+ + EL + + LL G PAS LVI Sbjct: 5 ELHVISNGHMSFEELVSVAMQIESEIDYLHIREREKSTKELYEGVESLLKKGFPASKLVI 64 Query: 63 NDRLDXXXXXXXXXXXXXWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGLFG 122 NDR+D + D ++G Sbjct: 65 NDRIDIAILLNIPRVQLGYRSTDVRSVKEKFSYLHVGYSVHSLEEAIEAFKNGADSLVYG 124 Query: 123 HVFPTACKPGQQERGLGLLAEAVRRSRMPLIAIGGIEPGNAAQVIRQGAAGIAVMSGICS 182 HVFPT CK G RGL +++ R +P+IAIGGI P N ++ +GIAVMSGI S Sbjct: 125 HVFPTECKKGVPARGLEEISDIARSLSIPIIAIGGITPENTKDILASEVSGIAVMSGIVS 184 Query: 183 TEDP 186 + +P Sbjct: 185 SSNP 188 >ref|NP_977123.1| regulatory protein TenI [Bacillus cereus ATCC 10987] gb|AAS39731.1| regulatory protein TenI [Bacillus cereus ATCC 10987] Length = 206 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%) Query: 3 EIHLISDGKLEPGRFINLAAAVYPLVDYIHLREKHRPALELLDMAKQLLLAGVPASSLVI 62 E+H+IS+G + +N+A + +DY+H+RE+ + EL + + LL G PAS +VI Sbjct: 4 ELHVISNGHMSFEELVNVAMQIESEIDYLHIREREKSTKELYEGVESLLKKGFPASKIVI 63 Query: 63 NDRLDXXXXXXXXXXXXXWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGLFG 122 NDR+D + D ++G Sbjct: 64 NDRIDIAILLNIPRVQLGYRSADVRSVKEKFSYLYVGYSVHSLEEAIDAFKNGADSLVYG 123 Query: 123 HVFPTACKPGQQERGLGLLAEAVRRSRMPLIAIGGIEPGNAAQVIRQGAAGIAVMSGICS 182 HVFPT CK G RGL +++ + +P+ AIGGI P N V+ G +GIAVMSGI S Sbjct: 124 HVFPTDCKKGVPARGLEEISDIAKCLSIPITAIGGITPENTGDVLANGVSGIAVMSGIIS 183 Query: 183 TEDP 186 + +P Sbjct: 184 SSNP 187 >ref|NP_389048.1| transcriptional regulator [Bacillus subtilis] sp|P25053|TENI_BACSU Regulatory protein tenI pir||XMBSTI regulatory protein tenI - Bacillus subtilis gb|AAA22849.1| transcription activator emb|CAB13023.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 205 Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 82/185 (44%) Query: 3 EIHLISDGKLEPGRFINLAAAVYPLVDYIHLREKHRPALELLDMAKQLLLAGVPASSLVI 62 E+H I+D + + VD+IH+RE+ + A ++L + + G+ LV+ Sbjct: 2 ELHAITDDSKPVEELARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVM 61 Query: 63 NDRLDXXXXXXXXXXXXXWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGLFG 122 N R+D DY LFG Sbjct: 62 NGRVDIALFSTIHRVQLPSGSFSPKQIRARFPHLHIGRSVHSLEEAVQAEKEDADYVLFG 121 Query: 123 HVFPTACKPGQQERGLGLLAEAVRRSRMPLIAIGGIEPGNAAQVIRQGAAGIAVMSGICS 182 HVF T CK G + RG+ LL++ +R +P+IAIGG+ P V + GA GIAVMSGI S Sbjct: 122 HVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFS 181 Query: 183 TEDPV 187 + +P+ Sbjct: 182 SAEPL 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 192,023,458 Number of extensions: 5625851 Number of successful extensions: 14838 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 14882 Number of HSP's successfully gapped: 27 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)