BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0271.0021.p
         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_654679.1| DUF170, Uncharacterized ACR, COG2104 [Bacillus ...    72   5e-12
ref|NP_830538.1| ThiS protein [Bacillus cereus ATCC 14579] >gi|2...    69   3e-11
ref|ZP_00183341.1| hypothetical protein Exigu127101 [Exiguobacte...    65   6e-10
ref|NP_249071.1| conserved hypothetical protein [Pseudomonas aer...    65   7e-10
ref|ZP_00089135.1| COG2104: Sulfur transfer protein involved in ...    64   1e-09

>ref|NP_654679.1| DUF170, Uncharacterized ACR, COG2104 [Bacillus anthracis A2012]
 ref|NP_843256.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_977125.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP24742.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS39733.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 67

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+ E  +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPESVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


>ref|NP_830538.1| ThiS protein [Bacillus cereus ATCC 14579]
 gb|AAP07739.1| ThiS protein [Bacillus cereus ATCC 14579]
          Length = 67

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+    +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPASVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


>ref|ZP_00183341.1| hypothetical protein Exigu127101 [Exiguobacterium sp. 255-15]
          Length = 67

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MN+ +NGK   + E+  T+ DLL      G++VI+E+N +I++R  Y  T+   GD +E+
Sbjct: 1  MNIRLNGKDYALIEETTTLHDLLQHLAIDGKIVIIEQNRQIIDRSRYPDTTVQPGDVVEI 60

Query: 61 VHFVGGG 67
          VHFVGGG
Sbjct: 61 VHFVGGG 67


>ref|NP_249071.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
 ref|ZP_00140816.1| COG2104: Sulfur transfer protein involved in thiamine
          biosynthesis [Pseudomonas aeruginosa UCBPP-PA14]
 pir||D83599 conserved hypothetical protein PA0380 [imported] - Pseudomonas
          aeruginosa (strain PAO1)
 gb|AAG03769.1| conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 66

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          M + +NG+  E+  D ++VADLL+R E  GR V VE N +IV R  +A T+  +GDR+E+
Sbjct: 1  MQIQLNGEPFELP-DAQSVADLLARLELGGRRVAVELNLDIVPRSQHASTALKDGDRVEI 59

Query: 61 VHFVGGG 67
          VH +GGG
Sbjct: 60 VHAIGGG 66


>ref|ZP_00089135.1| COG2104: Sulfur transfer protein involved in thiamine
          biosynthesis [Azotobacter vinelandii]
          Length = 66

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          M + +NG+  E+A D +T+ADLL+R + +GR V VE N +IV R  +A T+  EGDR+E+
Sbjct: 1  MRIQLNGEPYELA-DGQTIADLLARLDLAGRRVAVELNLDIVPRSLHAATALREGDRVEV 59

Query: 61 VHFVGGG 67
          VH +GGG
Sbjct: 60 VHAIGGG 66


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,959,579
Number of extensions: 3137784
Number of successful extensions: 7085
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 7111
Number of HSP's successfully gapped: 24
Length of query: 67
Length of database: 757,237,578
Length adjustment: 38
Effective length of query: 29
Effective length of database: 654,063,816
Effective search space: 18967850664
Effective search space used: 18967850664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)