BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0018.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_797305.1| conserved hypothetical protein [Vibrio parahaem... 186 3e-46 sp|Q87R72|Y926_VIBPA Hypothetical protein VP0926 186 3e-46 ref|NP_933906.1| predicted hydrolase [Vibrio vulnificus YJ016] >... 181 1e-44 ref|NP_754718.1| Hypothetical protein yfbR [Escherichia coli CFT... 181 2e-44 ref|NP_288865.1| putative alpha helix protein [Escherichia coli ... 180 2e-44 >ref|NP_797305.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC59189.1| conserved hypothetical protein [Vibrio parahaemolyticus] Length = 206 Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L R++ IQRW LMRS +PENV++HS QVA ++H L I N F +LN +R A + Sbjct: 17 HFFAHLARMKLIQRWPLMRSVSPENVSEHSLQVAFVAHALALIKNKKFGGTLNPERIALL 76 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HD++EV TGD+ TPVK+ NP + ++ +E A +L+ M+P E +AP L Sbjct: 77 AMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEHKLLSMLPEEFQEDFAPFLLSHS 136 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 S ED+++ VK AD + AYLKC+ E++AGN EFA AK + L+ + PEMEYFL Sbjct: 137 --SHEEDSQI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDVTLQERKTPEMEYFL 191 Query: 191 AHMAPGFELSLDELS 205 AP FELSLDE+S Sbjct: 192 NTFAPSFELSLDEIS 206 >sp|Q87R72|Y926_VIBPA Hypothetical protein VP0926 Length = 194 Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L R++ IQRW LMRS +PENV++HS QVA ++H L I N F +LN +R A + Sbjct: 5 HFFAHLARMKLIQRWPLMRSVSPENVSEHSLQVAFVAHALALIKNKKFGGTLNPERIALL 64 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HD++EV TGD+ TPVK+ NP + ++ +E A +L+ M+P E +AP L Sbjct: 65 AMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEHKLLSMLPEEFQEDFAPFLLSHS 124 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 S ED+++ VK AD + AYLKC+ E++AGN EFA AK + L+ + PEMEYFL Sbjct: 125 --SHEEDSQI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDVTLQERKTPEMEYFL 179 Query: 191 AHMAPGFELSLDELS 205 AP FELSLDE+S Sbjct: 180 NTFAPSFELSLDEIS 194 >ref|NP_933906.1| predicted hydrolase [Vibrio vulnificus YJ016] dbj|BAC93877.1| predicted hydrolase [Vibrio vulnificus YJ016] Length = 197 Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 131/202 (64%), Gaps = 5/202 (2%) Query: 4 VTLKLNYHFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLN 63 +T+ HF A+L R++ IQRW LMRS + ENV++HS QVA ++H L I N F +N Sbjct: 1 MTIVQESHFFAHLARMKLIQRWPLMRSVSSENVSEHSLQVAFVAHALALIKNKKFGGHIN 60 Query: 64 ADRAAAMALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYA 123 A+R A +A++HD++EV TGD+ TPVK+ NP + ++ +E A ++L+ M+P E + Sbjct: 61 AERVAVLAMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEQKLLSMLPEEFQEDFR 120 Query: 124 PLLQPQDSPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEM 183 P + Q + E+A++ VK AD + AYLKC+ E++AGN EFA AK + L + Sbjct: 121 PFVISQQ--TSEEEAQI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDITLAERKT 175 Query: 184 PEMEYFLAHMAPGFELSLDELS 205 PEM+YFL AP FELSLDE+S Sbjct: 176 PEMDYFLNTFAPSFELSLDEIS 197 >ref|NP_754718.1| Hypothetical protein yfbR [Escherichia coli CFT073] gb|AAN81286.1| Hypothetical protein yfbR [Escherichia coli CFT073] Length = 199 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/195 (46%), Positives = 131/195 (67%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L RL+ I RW LMR+ ENV++HS QVA+++H L +I N F ++NA+R A + Sbjct: 5 HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALL 64 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HDA+EV TGD+ TPVK+ N ++ ++ +E+IA ++L+ M+P EL ++APL+ D Sbjct: 65 AMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLI---D 121 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 + S++ + L VK AD L AYLKC+ E+AAGN EF AK + A L EM+YF+ Sbjct: 122 EHAYSDEEKSL--VKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFM 179 Query: 191 AHMAPGFELSLDELS 205 P F LSLDE+S Sbjct: 180 EVFVPSFHLSLDEIS 194 >ref|NP_288865.1| putative alpha helix protein [Escherichia coli O157:H7 EDL933] ref|NP_311202.1| putative alpha helix protein [Escherichia coli O157:H7] sp|Q8XCV3|YFBR_ECO57 Hypothetical protein yfbR pir||H85869 probable alpha helix protein Z3552 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) pir||G91025 probable alpha helix protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gb|AAG57420.1| putative alpha helix protein [Escherichia coli O157:H7 EDL933] dbj|BAB36598.1| putative alpha helix protein [Escherichia coli O157:H7] Length = 199 Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/195 (46%), Positives = 131/195 (67%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L RL+ I RW LMR+ ENV++HS QVA+++H L +I N F ++NA+R A + Sbjct: 5 HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALL 64 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HDA+EV TGD+ TPVK+ N ++ ++ +E+IA ++L+ M+P EL ++APL+ D Sbjct: 65 AMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLI---D 121 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 + S++ + L VK AD L AYLKC+ E+AAGN EF AK + A L EM+YF+ Sbjct: 122 EHAYSDEEKSL--VKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFM 179 Query: 191 AHMAPGFELSLDELS 205 P F LSLDE+S Sbjct: 180 EVFVPSFHLSLDEIS 194 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 314,361,746 Number of extensions: 11727555 Number of successful extensions: 26673 Number of sequences better than 1.0e-05: 38 Number of HSP's gapped: 26671 Number of HSP's successfully gapped: 38 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)