BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0004.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244017.1| BH3151~unknown conserved protein in B. subtilis... 96 6e-19 ref|NP_834291.1| Integral membrane protein [Bacillus cereus ATCC... 94 2e-18 ref|NP_981009.1| membrane protein, putative [Bacillus cereus ATC... 85 1e-15 ref|NP_658613.1| hypothetical protein predicted by GeneMark [Bac... 85 2e-15 ref|NP_693512.1| hypothetical protein OB2591 [Oceanobacillus ihe... 63 6e-09 >ref|NP_244017.1| BH3151~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||G84043 hypothetical protein BH3151 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06870.1| BH3151 [Bacillus halodurans] Length = 213 Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%) Query: 20 DGFGVGITYGLRKMKXXXXXXXXXXXXXXXXXYVSMQVGVLLAKVVSPHAASSIGAVILV 79 D FGVG+TYGLRKMK ++M G+ + + +SP A S+G +IL+ Sbjct: 17 DSFGVGLTYGLRKMKIPFKSLLFIAGCSAVSILIAMGFGMTIQQYLSPAIAESLGGIILI 76 Query: 80 LMGCWSLFQMLTQKEKDHDGKSPGDQHGRADHDXXXXXXXXXXXXXXXXXXXXXXXXXSP 139 L+GCW+L+Q + H K D H Sbjct: 77 LIGCWALYQAFRPAKNGHKTK---DDH--------------------------------- 100 Query: 140 KSAVFSLELRHLGVVIQILRTPSSADMDASGSISSTEAMVLGIXXXXXXXXXXXXXXXXX 199 + + E++ LGVVI+ILR P AD D SG+I+ EA++LGI Sbjct: 101 --VILNFEIKMLGVVIRILRKPMVADFDNSGAITGREAVILGIALSLDAFGAGIGAALIG 158 Query: 200 XXPVSTSLMIALFSGTFLLLGMKTGLKLSGSYWMKHXXXXXXXXXXXMGIMKLL 253 P+ ++ +A+ S F+ LGMK+G + + SYW+K +G+ L+ Sbjct: 159 FHPLYMAVSVAVMSALFVSLGMKSGYRFADSYWIKRFSFIPGLLLVLIGVFNLM 212 >ref|NP_834291.1| Integral membrane protein [Bacillus cereus ATCC 14579] gb|AAP11492.1| Integral membrane protein [Bacillus cereus ATCC 14579] Length = 210 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 99/233 (42%), Gaps = 39/233 (16%) Query: 20 DGFGVGITYGLRKMKXXXXXXXXXXXXXXXXXYVSMQVGVLLAKVVSPHAASSIGAVILV 79 D VG+TYGLR ++ VSM +G ++AKV SP A+ IG ++L+ Sbjct: 17 DSCSVGLTYGLRSVRIPLRSIIIIGMCSAAVMLVSMGIGHMIAKVFSPVIATRIGGLVLI 76 Query: 80 LMGCWSLFQMLTQKEKDHDGKSPGDQHGRADHDXXXXXXXXXXXXXXXXXXXXXXXXXSP 139 +G W L+Q + K+ + Sbjct: 77 GIGIWVLYQFFRSERKEEPKQ--------------------------------------- 97 Query: 140 KSAVFSLELRHLGVVIQILRTPSSADMDASGSISSTEAMVLGIXXXXXXXXXXXXXXXXX 199 + V+ LE+ LG+VIQILR P+ AD D SG+IS+ EA++LGI Sbjct: 98 EEKVWKLEIASLGLVIQILRKPTVADFDKSGTISAGEALLLGIALSVDSFGAGIGASLLG 157 Query: 200 XXPVSTSLMIALFSGTFLLLGMKTGLKLSGSYWMKHXXXXXXXXXXXMGIMKL 252 P ++++A+ S FL +GMK G LS W++ +GI K+ Sbjct: 158 YAPAMMAILVAVMSSLFLFIGMKLGTVLSNMKWLQKFTFLPGVLLIIIGIWKM 210 >ref|NP_981009.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS43617.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 210 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 99/233 (42%), Gaps = 39/233 (16%) Query: 20 DGFGVGITYGLRKMKXXXXXXXXXXXXXXXXXYVSMQVGVLLAKVVSPHAASSIGAVILV 79 D VG+TYGLR ++ VSM +G ++AKV SP A+ IG ++L+ Sbjct: 17 DSCSVGLTYGLRSVRIPLRSIVIIGMCSAAVMLVSMGIGHMIAKVFSPVIATRIGGLVLI 76 Query: 80 LMGCWSLFQMLTQKEKDHDGKSPGDQHGRADHDXXXXXXXXXXXXXXXXXXXXXXXXXSP 139 +G W L+Q ++K+ Sbjct: 77 GIGIWVLYQFFRSEKKEEP---------------------------------------KQ 97 Query: 140 KSAVFSLELRHLGVVIQILRTPSSADMDASGSISSTEAMVLGIXXXXXXXXXXXXXXXXX 199 + V+ LE+ LG+VIQILR P+ AD D SG+IS+ EA++LGI Sbjct: 98 EEKVWKLEIASLGLVIQILRKPTVADFDKSGTISAGEALLLGIALSVDSFGAGIGASLLG 157 Query: 200 XXPVSTSLMIALFSGTFLLLGMKTGLKLSGSYWMKHXXXXXXXXXXXMGIMKL 252 P ++++A+ S FL +GMK G LS W++ +GI K+ Sbjct: 158 YTPAMMAILVAVMSSLFLFIGMKLGTVLSNMKWLQKFTFLPGVLLIIIGIWKM 210 >ref|NP_658613.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847032.1| membrane protein, putative [Bacillus anthracis str. Ames] gb|AAP28518.1| membrane protein, putative [Bacillus anthracis str. Ames] Length = 210 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 39/233 (16%) Query: 20 DGFGVGITYGLRKMKXXXXXXXXXXXXXXXXXYVSMQVGVLLAKVVSPHAASSIGAVILV 79 D VG+TYGLR ++ VSM +G ++AK+ SP A+ IG ++L+ Sbjct: 17 DSCSVGLTYGLRSVRIPLRSIIIIGMCSAAVMLVSMGIGHMIAKIFSPVIATRIGGLVLI 76 Query: 80 LMGCWSLFQMLTQKEKDHDGKSPGDQHGRADHDXXXXXXXXXXXXXXXXXXXXXXXXXSP 139 +G W L+Q ++K+ Sbjct: 77 GIGIWVLYQFFRSEKKEEP---------------------------------------KQ 97 Query: 140 KSAVFSLELRHLGVVIQILRTPSSADMDASGSISSTEAMVLGIXXXXXXXXXXXXXXXXX 199 + V+ LE+ LG+VIQILR P+ AD D SG+IS+ EA++LGI Sbjct: 98 EEKVWKLEIASLGLVIQILRKPTVADFDKSGTISAGEALLLGIALSVDSFGAGIGASLLG 157 Query: 200 XXPVSTSLMIALFSGTFLLLGMKTGLKLSGSYWMKHXXXXXXXXXXXMGIMKL 252 P ++++A+ S FL +GMK G LS W++ +GI K+ Sbjct: 158 YAPAMMAILVAVMSSLFLFIGMKLGTVLSNMKWLQKFTFLPGVLLIIIGIWKM 210 >ref|NP_693512.1| hypothetical protein OB2591 [Oceanobacillus iheyensis HTE831] dbj|BAC14547.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 208 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 43/234 (18%) Query: 20 DGFGVGITYGLRKMKXXXXXXXXXXXXXXXXXYVSMQVGVLLAKVVSPHAASSIGAVILV 79 DG GVGITYG+RK+K Y SM +G LL+ ++S S +G IL+ Sbjct: 17 DGLGVGITYGMRKIKVPFIAILIIMICSGCIVYTSMTIGELLSNILSTKITSMLGGSILI 76 Query: 80 LMGCWSLFQMLTQKEKDHDGKSPGDQHGRADHDXXXXXXXXXXXXXXXXXXXXXXXXXSP 139 +G +SL + K +D K H HD Sbjct: 77 FLGIFSLINIFRSK---NDSK-----HSEELHDPS------------------------- 103 Query: 140 KSAVFSLELRHLGVVIQILRTPSSADMDASGSISSTEAMVLGIXXXXXXXXXXXXXXXXX 199 +L +L V + TP +AD+D SG I+ EA +LG+ Sbjct: 104 -------KLENLKTV---MSTPDNADLDKSGVITVGEAFLLGLALALDAFGAGIGAAMLG 153 Query: 200 XXPVSTSLMIALFSGTFLLLGMKTGLKLSGSYWMKHXXXXXXXXXXXMGIMKLL 253 P +T+++ A+ SG FL G++ G LS + ++ +G++ L Sbjct: 154 YPPFTTAILTAVMSGLFLKCGIQLGSFLSKNQKLRRLSFLPPAILISIGVLNLF 207 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 208,609,636 Number of extensions: 5076010 Number of successful extensions: 9915 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 9916 Number of HSP's successfully gapped: 7 Length of query: 253 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 130 Effective length of database: 423,280,401 Effective search space: 55026452130 Effective search space used: 55026452130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)