BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0002.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347734.1| Secreted protein, similar to catalytic domain o... 132 3e-30 ref|NP_782662.1| soluble lytic murein transglycosylase [Clostrid... 129 5e-29 ref|NP_622528.1| Soluble lytic murein transglycosylase and relat... 124 8e-28 ref|NP_562908.1| conserved hypothetical protein [Clostridium per... 118 8e-26 ref|NP_485155.1| probable transglycosylase [Nostoc sp. PCC 7120]... 117 1e-25 >ref|NP_347734.1| Secreted protein, similar to catalytic domain of murein transglycosylase [Clostridium acetobutylicum] pir||G97035 secreted protein, similar to catalytic domain of murein transglycosylase CAC1100 [imported] - Clostridium acetobutylicum gb|AAK79074.1| Secreted protein, similar to catalytic domain of murein transglycosylase [Clostridium acetobutylicum] Length = 183 Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 100/168 (59%), Gaps = 4/168 (2%) Query: 21 LFL---STNWMSWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIGL 77 LFL + N + FYP+ Y + I +S +IDP+ V A+IRVE+NF S K A GL Sbjct: 15 LFLALNTRNILKHFYPVRYVSYIEKYSKENDIDPYFVMAVIRVESNFNASARSNKDAYGL 74 Query: 78 MQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIAAYNA 137 MQ+ P+TA+WA EK L + ++ L +P NI++G WYL LS +F G++ ++AAYN Sbjct: 75 MQITPETAEWAAEKMGLQNFKVDDL-SDPEINIKIGCWYLKDLSSEFGGDQTLILAAYNG 133 Query: 138 GPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 G G V++WL+ + IP GET YV++V+ Y Y +Y+ Sbjct: 134 GRGNVKKWLNNKTNSKDGKTLHYIPYGETSKYVKKVMMDYKVYKRLYD 181 >ref|NP_782662.1| soluble lytic murein transglycosylase [Clostridium tetani E88] gb|AAO36599.1| soluble lytic murein transglycosylase [Clostridium tetani E88] Length = 205 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 2/172 (1%) Query: 14 FIGFTAILFLSTNWMSWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKG 73 I ++ LS YP+ Y I +SN +DP+LVAAII+ E+N+ S K Sbjct: 35 IIAVVILVNLSMLLGKKMYPLNYSENIFYYSNKNNLDPYLVAAIIKAESNYNKNAVSCKN 94 Query: 74 AIGLMQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIA 133 A GLMQ+ P+T KW E+ K+ D ++RL EP NI +G WYL++L +F+ + VIA Sbjct: 95 ASGLMQITPETGKWIAEQMKVEDFDIKRL-HEPELNISMGCWYLNNLRSEFKDMDL-VIA 152 Query: 134 AYNAGPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 AYNAG G VQ+WL+ D + NIP ET YV++V Y Y +Y+ Sbjct: 153 AYNAGRGNVQKWLNNADHSKDGQNLHNIPFKETDKYVKKVRVNYKIYKFLYD 204 >ref|NP_622528.1| Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Thermoanaerobacter tengcongensis] gb|AAM24132.1| Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Thermoanaerobacter tengcongensis] Length = 185 Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 27 WMSWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIGLMQLMPDTAK 86 ++ FYP+ Y+ + ++S + +DP+LV AII+VE+NF S + AIGLMQ+MPDT + Sbjct: 26 FLKKFYPLKYEEYVNSYSKEFGLDPYLVFAIIKVESNFNPYAISNRNAIGLMQIMPDTGR 85 Query: 87 WALEKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIAAYNAGPGKVQRWL 146 W K + D E + P NI++G WYL L + F+GN +AAYN G G V WL Sbjct: 86 WIAAKLGMKDFK-EEILFNPEVNIKMGVWYLHYLLKNFDGNLKLALAAYNGGCGNVDLWL 144 Query: 147 DEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYNE 186 + + + +IP ET YV++V+ Y Y IY + Sbjct: 145 KDKRFSQDGRQLHSIPFPETDRYVKKVLAVYQMYKFIYTK 184 >ref|NP_562908.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB81698.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 181 Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 96/168 (57%), Gaps = 4/168 (2%) Query: 20 ILFLSTNWM--SWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIGL 77 +LFL + ++ + +P+ Y N + +S Y +DP+ V A+++ E+NF +S K A GL Sbjct: 16 LLFLGSGYILKNVIFPLKYMNYVEKYSKEYNLDPYFVMAVMKAESNFDEDAKSNKDARGL 75 Query: 78 MQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIAAYNA 137 MQ+ T KW EK + D L EP NI G WYL++L ++F G+ VIAAYNA Sbjct: 76 MQITTSTGKWIAEKQGIIDFDTNLLL-EPEVNIRFGCWYLNNLHKEF-GDWDLVIAAYNA 133 Query: 138 GPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 G G+VQ WL+ + + IP ET YV++V YY+ Y +Y+ Sbjct: 134 GRGRVQEWLNSAEHSDDGKNLTYIPFKETDKYVKKVNVYYNIYRSLYS 181 >ref|NP_485155.1| probable transglycosylase [Nostoc sp. PCC 7120] pir||AE1945 hypothetical protein alr1112 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB73069.1| ORF_ID:alr1112~probable transglycosylase [Nostoc sp. PCC 7120] Length = 731 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 32 YPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIGLMQLMPDTAKWALEK 91 YP Y EI S+ E++P LV A++R E+ F+ +S GA GLMQ+MPDTAKW K Sbjct: 560 YPFPYLKEIEKWSSERELNPLLVTALMRQESRFEAKIKSVVGATGLMQVMPDTAKWIASK 619 Query: 92 AKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIAAYNAGPGKVQRWLDEGDW 151 L D+ L E P+ N+ LGTWYL ++ N + IA+YNAGPG V RWL Sbjct: 620 IPL-DIKTINL-ENPNDNVMLGTWYLDYTHERYGNNSMLAIASYNAGPGSVARWLKTLPN 677 Query: 152 DGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 + V+ IP ETR YV++V Y Y +YN Sbjct: 678 QDPDEFVEAIPFNETRDYVRQVFGNYWNYLRLYN 711 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 283,671,920 Number of extensions: 11288657 Number of successful extensions: 28161 Number of sequences better than 1.0e-05: 445 Number of HSP's gapped: 27618 Number of HSP's successfully gapped: 445 Length of query: 187 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 69 Effective length of database: 436,855,896 Effective search space: 30143056824 Effective search space used: 30143056824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)