BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0001.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244012.1| BH3146~unknown conserved protein [Bacillus halo... 199 2e-50 ref|NP_658610.1| DUF193, Uncharacterized BCR, COG1327 [Bacillus ... 186 1e-46 ref|NP_390778.1| ytcG [Bacillus subtilis] >gi|18202538|sp|Q45549... 184 5e-46 ref|NP_470933.1| similar to unknown protein [Listeria innocua] >... 181 6e-45 ref|NP_465087.1| similar to unknown protein [Listeria monocytoge... 181 6e-45 >ref|NP_244012.1| BH3146~unknown conserved protein [Bacillus halodurans] sp|Q9K861|YV46_BACHD Hypothetical UPF0168 protein BH3146 pir||B84043 hypothetical protein BH3146 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06865.1| BH3146 [Bacillus halodurans] Length = 153 Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/150 (65%), Positives = 118/150 (78%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP C H T+VLDSRPA+E +SI FTTFEMIEE PLIV+KK G+R+E Sbjct: 1 MRCPACHHNGTRVLDSRPAHEGRSIRRRRECESCNHRFTTFEMIEEVPLIVVKKDGTRQE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FS DKILRGLIRACEKRPV +E LE IV+EVE+ LRG EV+S++IGELVME+L VD Sbjct: 61 FSSDKILRGLIRACEKRPVPLETLEGIVNEVERELRGQGKNEVDSKEIGELVMERLANVD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSK 162 +VAYVRFASVYRQFKDIN+F++ELK L+ + Sbjct: 121 DVAYVRFASVYRQFKDINVFIQELKELMER 150 >ref|NP_658610.1| DUF193, Uncharacterized BCR, COG1327 [Bacillus anthracis A2012] ref|NP_834287.1| putative regulatory protein [Bacillus cereus ATCC 14579] ref|NP_981004.1| ATP cone domain protein [Bacillus cereus ATCC 10987] sp|Q817H0|Y9I1_BACCR Hypothetical UPF0168 protein BC4581 gb|AAP11488.1| putative regulatory protein [Bacillus cereus ATCC 14579] gb|AAS43612.1| ATP cone domain protein [Bacillus cereus ATCC 10987] Length = 153 Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 87/150 (58%), Positives = 116/150 (77%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP C H T+VLDSRP +E +SI FTTFE +EE+PLIV+KK G+REE Sbjct: 1 MRCPSCSHNGTRVLDSRPVDEGRSIRRRRECESCLSRFTTFERVEESPLIVVKKEGTREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 F+++KILRGLI+ACEKRPVS+ +LE + VE+ LR + ++EV+S IGE+VME+L +D Sbjct: 61 FNKEKILRGLIKACEKRPVSLRQLEEVTQSVERELRNLGISEVKSDMIGEIVMEELRDID 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSK 162 +VAYVRFASVYRQFKD+N+F++ELK +L K Sbjct: 121 DVAYVRFASVYRQFKDLNVFIEELKDILQK 150 >ref|NP_390778.1| ytcG [Bacillus subtilis] sp|Q45549|YTCG_BACSU Hypothetical UPF0168 protein ytcG pir||D69989 hypothetical protein ytcG - Bacillus subtilis gb|AAC00357.1| YtcG [Bacillus subtilis] emb|CAB14860.1| ytcG [Bacillus subtilis subsp. subtilis str. 168] Length = 152 Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 90/150 (60%), Positives = 113/150 (75%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 MKCP C H T+VLDSRP ++ KSI FTTFE +EETPLIV+KK G REE Sbjct: 1 MKCPSCQHNGTRVLDSRPVDDGKSIRRRRECESCHYRFTTFEKVEETPLIVVKKEGVREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FSR+K+LRGLI+ACEKRPVS++ LE + ++EK LR +EV+S +GE+VM++L +D Sbjct: 61 FSREKMLRGLIKACEKRPVSLKTLEDMCFDIEKELRNQGCSEVKSELVGEMVMDRLAKID 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSK 162 EVAYVRFASVYRQFKDIN+F+ ELK L+ K Sbjct: 121 EVAYVRFASVYRQFKDINVFIDELKDLIKK 150 >ref|NP_470933.1| similar to unknown protein [Listeria innocua] sp|Q92BF3|YF97_LISIN Hypothetical UPF0168 protein Lin1597 pir||AD1632 hypothetical protein homolog lin1597 [imported] - Listeria innocua (strain Clip11262) emb|CAC96828.1| lin1597 [Listeria innocua] Length = 154 Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 114/151 (75%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP C + T+V+DSRPA++ SI FTTFE +EE+PLIV+KK G+REE Sbjct: 1 MRCPTCKYNGTRVVDSRPADDGNSIRRRRECEKCGFRFTTFEKVEESPLIVVKKDGAREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 F+R+K+ RGLIRACEKRPVS E++E IV+EVE+ LR I +E+ S IGE VM +L +D Sbjct: 61 FAREKVRRGLIRACEKRPVSAEQIEEIVNEVERELRNIGDSEIASDLIGEKVMNKLASLD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSKG 163 EVAYVRFASVYRQFKDI++F++ELK L+ K Sbjct: 121 EVAYVRFASVYRQFKDISVFVEELKDLMEKN 151 >ref|NP_465087.1| similar to unknown protein [Listeria monocytogenes EGD-e] sp|Q8Y6W9|YF62_LISMO Hypothetical UPF0168 protein Lmo1562 pir||AB1270 hypothetical protein lmo1562 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99640.1| lmo1562 [Listeria monocytogenes] Length = 154 Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 114/151 (75%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP C + T+V+DSRPA++ SI FTTFE +EE+PLIV+KK G+REE Sbjct: 1 MRCPTCQYNGTRVVDSRPADDGNSIRRRRECEKCGFRFTTFEKVEESPLIVVKKDGAREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 F+R+K+ RGLIRACEKRPVS E++E IV+EVE+ LR I +E+ S IGE VM +L +D Sbjct: 61 FAREKVRRGLIRACEKRPVSAEQIEEIVNEVERELRNIGDSEIASDLIGEKVMNKLANLD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSKG 163 EVAYVRFASVYRQFKDI++F++ELK L+ K Sbjct: 121 EVAYVRFASVYRQFKDISVFVEELKDLMEKN 151 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 205,934,653 Number of extensions: 6572208 Number of successful extensions: 18553 Number of sequences better than 1.0e-05: 452 Number of HSP's gapped: 18409 Number of HSP's successfully gapped: 452 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)