BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0006.p (135 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_815375.1| short chain dehydrogenase family protein [Enter... 120 1e-26 ref|NP_783992.1| short-chain dehydrogenase/oxidoreductase [Lacto... 104 6e-22 ref|NP_657297.1| adh_short, short chain dehydrogenase [Bacillus ... 95 6e-19 ref|NP_521259.1| PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia sola... 93 2e-18 ref|NP_391239.1| similar to 3-oxoacyl- acyl-carrier protein redu... 87 1e-16 >ref|NP_815375.1| short chain dehydrogenase family protein [Enterococcus faecalis V583] gb|AAO81445.1| short chain dehydrogenase family protein [Enterococcus faecalis V583] Length = 264 Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 3/110 (2%) Query: 1 MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60 MD+ L NK AL STKGIGKAIA+E+A+EG +V+INGR+ E + V E+++ FP Sbjct: 1 MDLHLTNKLALITG---STKGIGKAIAIEMAREGTDVIINGRNEAEVTKVVKEIQTMFPD 57 Query: 61 TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110 T PQ ADI QR L EK+P +DILVNN GI+E M+Y D+DD WE Sbjct: 58 THPQAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWE 107 >ref|NP_783992.1| short-chain dehydrogenase/oxidoreductase [Lactobacillus plantarum WCFS1] emb|CAD62830.1| short-chain dehydrogenase/oxidoreductase [Lactobacillus plantarum WCFS1] Length = 264 Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 3/110 (2%) Query: 1 MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60 M+MGL K L STKGIG+AIAV AKEG +V+INGR + V+E+ + +P Sbjct: 1 MEMGLAGKRVLVTG---STKGIGRAIAVAFAKEGADVVINGRRADTVAAVVDELAAAYPT 57 Query: 61 TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110 T P A DI D +Q + +F++ P +D+LVNN GI+ M Y+++DD WE Sbjct: 58 THPVAAPYDISDPQQADKMFQQIPTVDVLVNNMGIFGPMAYDEIDDATWE 107 >ref|NP_657297.1| adh_short, short chain dehydrogenase [Bacillus anthracis A2012] ref|NP_845724.1| oxidoreductase, short chain dehydrogenase/reductase family [Bacillus anthracis str. Ames] gb|AAP27210.1| oxidoreductase, short chain dehydrogenase/reductase family [Bacillus anthracis str. Ames] Length = 264 Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 1 MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60 M M L KTAL ST GIGKAIA L EG NVLINGR E T+ E+++ +P Sbjct: 1 MHMQLKGKTALVTG---STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPD 57 Query: 61 TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIW 109 Q AD+ + + + EKYP +DIL+NN GI+E ++Y D+ DE W Sbjct: 58 AILQPVVADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDW 106 >ref|NP_521259.1| PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] emb|CAD16847.1| PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] Length = 262 Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 3/109 (2%) Query: 1 MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60 MD+ L NK AL STKGIG AIAV LA EG V++NGR+ V+ + + P Sbjct: 1 MDLHLQNKLALVTG---STKGIGHAIAVALAAEGARVILNGRTDASVAEAVSRLLAEVPG 57 Query: 61 TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIW 109 + A D+ D Q AL ++P +DILVNN GI++ +ED+DD W Sbjct: 58 AHAEAFAGDLSDPAQARALAARFPRVDILVNNLGIFDPKPFEDIDDAEW 106 >ref|NP_391239.1| similar to 3-oxoacyl- acyl-carrier protein reductase [Bacillus subtilis] pir||E70027 probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) yvaG - Bacillus subtilis emb|CAB15364.1| yvaG [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 1 MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60 M + L KTAL ST GIGKAIA LA+EG V+INGR E+ +T++E+K+ Sbjct: 1 MKLNLQGKTALVTG---STSGIGKAIASSLAEEGAAVIINGRREEKVNQTIDELKTQHAE 57 Query: 61 TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIW 109 AA D+ LF+ YP++DILVNN GI+E +Y D+ D+ W Sbjct: 58 AVLYPAAFDLGTEEGCNELFQAYPEVDILVNNLGIFEPAEYFDIPDDEW 106 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 181,030,214 Number of extensions: 6803049 Number of successful extensions: 26721 Number of sequences better than 1.0e-05: 157 Number of HSP's gapped: 28204 Number of HSP's successfully gapped: 157 Length of query: 135 Length of database: 757,237,578 Length adjustment: 97 Effective length of query: 38 Effective length of database: 493,872,975 Effective search space: 18767173050 Effective search space used: 18767173050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)