BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0007.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ13198.1| unknown [environmental sequence] 161 1e-38 gb|EAK37366.1| unknown [environmental sequence] 157 1e-37 gb|EAI26675.1| unknown [environmental sequence] 144 1e-33 gb|EAJ00231.1| unknown [environmental sequence] 142 5e-33 ref|NP_357380.1| AGR_L_3181p [Agrobacterium tumefaciens] >gi|179... 140 2e-32 >gb|EAJ13198.1| unknown [environmental sequence] Length = 346 Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRG+AQL+TGGQII + + Y +G G LAA P +++ Sbjct: 136 MVAGRGVAQLLTGGQIIPIGAPGYLALGGGYLAAAPCAVWIALATIAATALLVNRTALGL 195 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FI ++G NP A+++ G+R+ ++ VY+ SSNV SADGNNAGL ELD Sbjct: 196 FIRAIGVNPVATRLVGLRSGAIVFGVYLCSGVMSALAGILASSNVRSADGNNAGLLLELD 255 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAV +GGTSL GGRF L G+V+GALIIQTLT T Y IGVPPE T I Sbjct: 256 AILAVTLGGTSLLGGRFSLAGSVLGALIIQTLTYTTYSIGVPPEATLVVKAVVVIVVTLI 315 Query: 181 QSDTFRAAIATRWKSRHYPAEKE 203 QSD R A+ R SR + + Sbjct: 316 QSDAAR-ALVVRHASRLLSSARS 337 >gb|EAK37366.1| unknown [environmental sequence] Length = 319 Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/196 (46%), Positives = 112/196 (57%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRGIAQL+T GQII + + Y +G G +P S++ Sbjct: 120 MVAGRGIAQLLTAGQIIPIGAPGYLLVGGGYWLGVPCSVWIASAAVLATAALVEGTALGL 179 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FI ++G NP A+++ G+R+ ++ AVY F SSNV SADGNNAGL ELD Sbjct: 180 FIRAIGVNPVATRLVGLRSKALVFAVYGFSGLTAAMAGILISSNVRSADGNNAGLLLELD 239 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAV +GGTSL GGRF LTGTV+GALIIQTLT T Y IGVPPE T I Sbjct: 240 AILAVTLGGTSLLGGRFSLTGTVLGALIIQTLTYTTYSIGVPPEATLVVKAAVVLAVSVI 299 Query: 181 QSDTFRAAIATRWKSR 196 QS + RA + + R Sbjct: 300 QSPSARALAMSLFTQR 315 >gb|EAI26675.1| unknown [environmental sequence] Length = 363 Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 108/213 (50%), Gaps = 4/213 (1%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRG+AQLI GQIIT +A IG G LP ++ Sbjct: 144 MVAGRGVAQLINQGQIITFQHPGFAAIGVGQFLGLPMPVWIVIGMLIFSQLLLRKTALGL 203 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FIE+VGCN AS+ GI + L Y ++++ +D NNAGLW ELD Sbjct: 204 FIEAVGCNAKASRYLGINDKSIKLFAYAIAGLCAALAGMISTADIQGSDANNAGLWLELD 263 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVVIGG +L GGRF L +V+GAL+IQTL TTI + G+P + + Sbjct: 264 AILAVVIGGAALTGGRFSLVLSVVGALVIQTLATTIIVSGLPAKFNLLIKAIVILTVLLL 323 Query: 181 QSDTFRAAIATRWKSRHY----PAEKEMSRHAS 209 QS FR ++ +KS+ PAEK S S Sbjct: 324 QSAKFRRQLSALFKSKRQADAKPAEKGTSAKVS 356 >gb|EAJ00231.1| unknown [environmental sequence] Length = 363 Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 108/213 (50%), Gaps = 4/213 (1%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRG+AQLI GQIIT +A IG G LP ++ Sbjct: 144 MVAGRGVAQLINQGQIITFQHPSFAAIGVGQFLGLPMPVWIVIGMLTFSQLLLRKTALGL 203 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FIE+VGCN AS+ GI + L Y ++++ +D NNAGLW ELD Sbjct: 204 FIEAVGCNAKASRYLGINDKSIKLFAYGIAGLCAALAGMISTADIQGSDANNAGLWLELD 263 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 A+LAVVIGG +L GGRF L +V+GALIIQTL TTI + G+P + + Sbjct: 264 AVLAVVIGGAALTGGRFSLILSVVGALIIQTLATTIIVSGLPAKFNLLIKAIVILTVLLL 323 Query: 181 QSDTFRAAIATRWKSRHY----PAEKEMSRHAS 209 QS FR ++ + S+ PAEK S AS Sbjct: 324 QSAKFRRQLSALFTSKRQTDAKPAEKGTSAKAS 356 >ref|NP_357380.1| AGR_L_3181p [Agrobacterium tumefaciens] ref|NP_533724.1| ABC transporter, membrane spanning protein [ribose] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C98330 hypothetical protein AGR_L_3181 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AB2953 hypothetical protein Atu3224 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90165.1| AGR_L_3181p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44040.1| ABC transporter, membrane spanning protein [ribose] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 348 Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/189 (41%), Positives = 101/189 (53%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRGIAQLIT G I+T +A IGSGS A +P + Sbjct: 135 MVAGRGIAQLITEGVILTFNDDGFAAIGSGSFAGVPLPVIIWVAAALVIGVLVRKSALGF 194 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 IE+ G N A+ ++G+RA ++ VY ++++ AD NNAGLW ELD Sbjct: 195 LIEATGINRRAAALAGVRARFLLFFVYAVSGLCAAIAGMIVTADIRGADANNAGLWLELD 254 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVVIGGTSLNGGRF +T ++IGALIIQT+ T I + G PPE + Sbjct: 255 AILAVVIGGTSLNGGRFSITASLIGALIIQTINTGILVSGFPPEFNLIIKAGIIMVVLTL 314 Query: 181 QSDTFRAAI 189 QS A + Sbjct: 315 QSPAIMAVL 323 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 225,828,479 Number of extensions: 6442050 Number of successful extensions: 14967 Number of sequences better than 1.0e-05: 343 Number of HSP's gapped: 14764 Number of HSP's successfully gapped: 343 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)