BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0006.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ13197.1| unknown [environmental sequence] 318 1e-85 gb|EAK37367.1| unknown [environmental sequence] 309 6e-83 ref|ZP_00066973.1| COG1172: Ribose/xylose/arabinose/galactoside ... 291 1e-77 gb|EAI26674.1| unknown [environmental sequence] 281 1e-74 gb|EAJ00230.1| unknown [environmental sequence] 280 3e-74 >gb|EAJ13197.1| unknown [environmental sequence] Length = 349 Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 170/315 (53%), Positives = 213/315 (67%), Gaps = 4/315 (1%) Query: 8 IPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSV 67 +PI+VT++LF +F GS YTGFFS+QVL LLVDNAFLLI A+GM+FVI+SGGIDLSV Sbjct: 1 MPIVVTVVLFAALFGFGSVTYTGFFSMQVLTGLLVDNAFLLIVAIGMTFVIVSGGIDLSV 60 Query: 68 GSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMF 127 GSV+AL+T+ A ++ WP V++PL L GA++G MGA+IHYF +QPFIVTLAGMF Sbjct: 61 GSVVALTTIFCAVGAERLHWPVWVIVPLALAFGALYGAAMGALIHYFRLQPFIVTLAGMF 120 Query: 128 LARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRF 187 LARG C++I+ +ITI+ + A+A +P+ GG+ LS H+TRF Sbjct: 121 LARGACFLITTQSITINEPVFHAIAGFSVPVGGGT-LSAGALIALATLAGAIYVAHFTRF 179 Query: 188 GRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFEL 247 GRNVYA+GG+E+SALLMGLPVARTKV VY LSG CSAL GVVFT Y+LSGYGL A G EL Sbjct: 180 GRNVYAIGGNERSALLMGLPVARTKVGVYALSGFCSALGGVVFTLYVLSGYGLQAQGMEL 239 Query: 248 DTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXXXXX 307 D I A I G IQ +I+F+GTLSSWWT+IV+G Sbjct: 240 DAIAATVIGGTLLTGGVGYVIGSVFGVGILGTIQVLITFDGTLSSWWTRIVVGALLCVFC 299 Query: 308 XXQRVL---SSRRLT 319 QRV+ ++RR T Sbjct: 300 VLQRVIERHAARRRT 314 >gb|EAK37367.1| unknown [environmental sequence] Length = 351 Score = 309 bits (791), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 167/315 (53%), Positives = 212/315 (67%), Gaps = 6/315 (1%) Query: 8 IPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSV 67 +PI VTILLF +F GS YTGF S QVL++LLVDNAFLLI A+GM+FVI+SGGIDLSV Sbjct: 1 MPIAVTILLFCALFGFGSVMYTGFLSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSV 60 Query: 68 GSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMF 127 GSV+AL+T+V A L + WP +++P+VLLMG VFG V GA+IH+F +Q FIVTLAGMF Sbjct: 61 GSVVALTTIVEAVLSEHMHWPVWLIVPIVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMF 120 Query: 128 LARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRF 187 ARGLC++I+ +ITI++ + ++ R+ + GS +S + H+TRF Sbjct: 121 FARGLCFLITTQSITINDPTFQKISAFRLNIGVGS-VSANVLIALVTLAAAIYVAHFTRF 179 Query: 188 GRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFEL 247 GRNVYA+GG+ +SALLMGLPVART++ VY LSG CSAL G VFTFY+LSGYGL G EL Sbjct: 180 GRNVYAVGGNPRSALLMGLPVARTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMEL 239 Query: 248 DTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXXXXX 307 D I A I G IQT+I+F+GTLSSWWT+IVIG Sbjct: 240 DAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGTLSSWWTRIVIGALLCAFC 299 Query: 308 XXQRVL-----SSRR 317 QR++ S+RR Sbjct: 300 LLQRLIERHAKSTRR 314 >ref|ZP_00066973.1| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Microbulbifer degradans 2-40] Length = 321 Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 198/313 (63%) Query: 1 MPLNRKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILS 60 M +NRK++P+ VT LF+ +F AGS ++ FF+L+V +NL DNAFL+I AVGM+FVILS Sbjct: 1 MMINRKFLPLYVTCSLFLALFLAGSVQFDNFFTLRVFVNLFTDNAFLIIAAVGMTFVILS 60 Query: 61 GGIDLSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFI 120 GGIDLSVGSVIAL+ +V + L++ W P +VL+ G VFG MGAIIH++ +QPFI Sbjct: 61 GGIDLSVGSVIALTGVVVSVLLENYQWHPLAAFAVVLVGGTVFGAAMGAIIHFYKLQPFI 120 Query: 121 VTLAGMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXX 180 VTLAGMF ARGL +IS +++ I + FY ++ LPG ++L S Sbjct: 121 VTLAGMFFARGLSTIISEESVPITHEFYDDVSMFGFELPGNAWLDASTIISIVVLVAAII 180 Query: 181 XXHYTRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGL 240 +YTRFG VYALGG QSA LMG+P+ART + VY + +ALAG+VF+FY SGY L Sbjct: 181 IANYTRFGGRVYALGGDAQSAGLMGVPIARTTISVYAFNSCLAALAGIVFSFYTFSGYSL 240 Query: 241 HAVGFELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIG 300 AVG ELD I A I GV+QT ISF+GTLSSWWTKIVIG Sbjct: 241 AAVGVELDAIAAVVIGGTLLTGGYGYVVGTLFGVLIMGVVQTYISFDGTLSSWWTKIVIG 300 Query: 301 XXXXXXXXXQRVL 313 QR+L Sbjct: 301 VLLFCFIALQRIL 313 >gb|EAI26674.1| unknown [environmental sequence] Length = 320 Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/296 (48%), Positives = 197/296 (66%) Query: 5 RKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGID 64 R++IP+ +T L + MF G+F++ GF S +V+ NLL DNAFLLITA+GM+ VI+SGGID Sbjct: 4 RRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISGGID 63 Query: 65 LSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLA 124 LSVG+VIALS +VS+ L+ + W P + ++L +G +FG +MG+IIH + +QPFIVTLA Sbjct: 64 LSVGAVIALSGVVSSLLITEYQWHPLLAFAVILPLGTLFGALMGSIIHVYKLQPFIVTLA 123 Query: 125 GMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHY 184 GMFLARGL +S ++I ID+ FY A+A+ I LPG + L +S HY Sbjct: 124 GMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGNAALDLSSLIFILFFVIIAIVMHY 183 Query: 185 TRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVG 244 +RFG NVYA+GG++ SA LMG+ +A+T + +Y +S + LAG+VFTFY SGY L A+G Sbjct: 184 SRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALGAIG 243 Query: 245 FELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIG 300 ELD I A + GVIQT I+F+G+LSSWWTKIVIG Sbjct: 244 VELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIG 299 >gb|EAJ00230.1| unknown [environmental sequence] Length = 320 Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/296 (48%), Positives = 195/296 (65%) Query: 5 RKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGID 64 R++IP+ +T L + MF G+F++ GF S +V+ NLL DNAFLLITA+GM+ VI+SGGID Sbjct: 4 RRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISGGID 63 Query: 65 LSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLA 124 LSVG+VIALS +V++ L+ + W P + ++L +G +FG +MG IIH + +QPFIVTLA Sbjct: 64 LSVGAVIALSGVVTSLLITEYQWHPLLAFAVILPLGTLFGALMGTIIHVYKLQPFIVTLA 123 Query: 125 GMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHY 184 GMFLARGL +S ++I ID+ FY A+A+ I LPG L +S HY Sbjct: 124 GMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGNGALDLSSLIFILFFVIIAVVMHY 183 Query: 185 TRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVG 244 TRFG NVYA+GG++ SA LMG+ +A+T + +Y +S + LAG+VFTFY SGY L A+G Sbjct: 184 TRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALGAIG 243 Query: 245 FELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIG 300 ELD I A + GVIQT I+F+G+LSSWWTKIVIG Sbjct: 244 VELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIG 299 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 356,117,823 Number of extensions: 11954792 Number of successful extensions: 56990 Number of sequences better than 1.0e-05: 680 Number of HSP's gapped: 56324 Number of HSP's successfully gapped: 720 Length of query: 322 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 196 Effective length of database: 415,135,104 Effective search space: 81366480384 Effective search space used: 81366480384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)