BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0003.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinso... 317 2e-85 pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum sa... 273 4e-72 ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl... 194 2e-48 ref|NP_696699.1| possible extracellular exo-xylanase [Bifidobact... 176 4e-43 gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grise... 148 2e-34 >ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinsonii] Length = 1266 Score = 317 bits (813), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 199/271 (73%), Gaps = 7/271 (2%) Query: 7 NPSTAAAATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNY 66 N TAA TNP I AD PD ++RVGN YYM+STTMHM PGVP+MKS DLVNW+IVNY Sbjct: 283 NAQTAA----TNPIINADVPDIAIVRVGNNYYMSSTTMHMNPGVPIMKSTDLVNWDIVNY 338 Query: 67 VYDTYANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIENGP 126 Y T + D+ +L NG+NEYG GSWASS+RY G+YYV+ +N TGRTYIY+T NIE GP Sbjct: 339 CYTTLSTSDSYSLANGKNEYGHGSWASSIRYFKGMYYVTTFAN-TGRTYIYKTANIETGP 397 Query: 127 WTSSVLGSYYHDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSSNI 185 WT S L + YHD +L F D+ RV+L+YG +I +IELTADA AIKSGG ++ +I N+ + Sbjct: 398 WTVSTLNASYHDCNLFFDDDDRVYLIYGQGDIKIIELTADASAIKSGGTNKTLITNAGAV 457 Query: 186 AGSSFIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDSGIA 245 AG + AEG+ + K NGYYY+ ICWPSG RTQ+ +RS++LTG Y +V L D G+A Sbjct: 458 AG-PIGLNAEGSQVLKHNGYYYINNICWPSGGMRTQIIHRSSTLTGTYESKVILKDQGVA 516 Query: 246 QGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 QG ++TP+G WYA LF+D GA GR+ YLVP Sbjct: 517 QGSFIETPAGKWYAYLFKDGGARGRVPYLVP 547 >pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum saccharolyticum gb|AAB87371.1| xylanase [Caldicellulosiruptor saccharolyticus] Length = 1347 Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/267 (50%), Positives = 172/267 (64%), Gaps = 15/267 (5%) Query: 17 TNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNYVYDTYANGDA 76 +NP I +D PD D+IRVGN YYM STTMH+TPGVP+M S DLVNW I+ YVYD + DA Sbjct: 55 SNPIILSDIPDPDIIRVGNDYYMVSTTMHLTPGVPIMHSTDLVNWRIIGYVYDRLEDNDA 114 Query: 77 QNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIENGPWTSSVLGSYY 136 NL NG N YG+G WA +RY+ G +YV FG+ TG+TY++ + NI GPW Y Sbjct: 115 HNLKNGMNIYGKGQWAPCIRYYKGKFYVLFGALDTGKTYLFSSKNI-TGPWERVEFNEYL 173 Query: 137 HDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSSNIAGSSFIVKAE 195 HD SLLF DNG+ +++YG I + EL D KAI G+++VII S I G E Sbjct: 174 HDPSLLFDDNGKAYIIYGGSEIRVKELMPDLKAINLKGLNKVII--KSKIDGLE-----E 226 Query: 196 GAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDS------GIAQGGI 249 G+H KING YY+ I W G R + YR+ + G Y G+V L+D+ G+AQGG+ Sbjct: 227 GSHAYKINGKYYITTIRWEKGGIREECVYRADKIDGPYEGRVVLSDTLGYKNNGVAQGGL 286 Query: 250 VDTPSGSWYAMLFRDSGAVGRMSYLVP 276 +DTP G WYAMLF+D AVGR+ LVP Sbjct: 287 IDTPDGKWYAMLFQDHDAVGRVPVLVP 313 >ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] gb|AAK76859.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] Length = 531 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/278 (42%), Positives = 161/278 (57%), Gaps = 29/278 (10%) Query: 15 TFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNYVYDTYANG 74 T+ NP +YAD PDN VI+VG+ YYM ++++ PG+P++KS DLVNWEI +Y +D G Sbjct: 41 TYQNPVMYADYPDNSVIKVGSTYYMACSSINYMPGLPILKSQDLVNWEICSYAFDRIDTG 100 Query: 75 ---------DAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTN-IEN 124 DA NL G+N Y +G WA SL+YHNG +Y +F S G+T++ T + Sbjct: 101 MSGIDKTHADAYNLVGGENVYSKGCWAPSLKYHNGTFYATFASLDLGKTFVCTKTGPMGF 160 Query: 125 GPWTSSVLG--SYYHDASLLFD-NGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPN 181 G WT + + Y HDA L FD +GRV+L+ G N++ ELT D K++K GGI+Q I Sbjct: 161 GGWTFTAISGIGYAHDADLFFDTDGRVYLINGGCNVT--ELTPDCKSVKYGGINQKIFDG 218 Query: 182 SSNIAGSSFIVKAEGAHIQKINGYYYVFLICWPSGSG---RTQLTYRSTSLTGGYSGQVS 238 + +G I K NGYYY+ L G+G R + +RS SLTG Y + Sbjct: 219 GPS---------HDGNRIFKKNGYYYI-LSTPIKGNGAYQRIEKAWRSKSLTGPYEQTII 268 Query: 239 LNDSGIAQGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 L+D Q +VD S +W AMLF D GAVGR+ L P Sbjct: 269 LDDGANHQVCVVDDGSYNW-AMLFEDKGAVGRIPKLAP 305 >ref|NP_696699.1| possible extracellular exo-xylanase [Bifidobacterium longum NCC2705] gb|AAN25335.1| possible extracellular exo-xylanase [Bifidobacterium longum NCC2705] Length = 958 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/285 (38%), Positives = 148/285 (51%), Gaps = 35/285 (12%) Query: 15 TFTNPFIYADAPDNDVIRVG----------NVYYMTSTTMHMTPGVPVMKSYDLVNWEIV 64 T++ P + D PD VIRV +VYYM STTM ++PG P+MKSYDLVNW IV Sbjct: 53 TYSIPMLNTDVPDISVIRVSKDDPNNKDGRDVYYMVSTTMELSPGSPIMKSYDLVNWWIV 112 Query: 65 NYVYDTYANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIEN 124 YVYD + DA +L NG + YG G WA SLRYHNG +YV F +N+ YIY T +IEN Sbjct: 113 TYVYDRISMSDASSLRNGASSYGEGEWAPSLRYHNGRFYVLFNTNNLNGAYIYYTDDIEN 172 Query: 125 GPWTSSVLGSYYHDASLLFDN-GRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSS 183 GPWT L +HD SL FD G +++ G + L S ++ V+ + + Sbjct: 173 GPWTKIALNRGFHDPSLYFDEQGSPWIISGVNQYRL-----------SDDLTTVVESHEN 221 Query: 184 NIAGSSFIVKA-------EGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQ 236 I+ F EG+ KI Y+Y I W GRT + R+T L G + Sbjct: 222 IISAEQFTDDLGETPTGFEGSQTFKIGDYFYTPTIYW-GKDGRTVMLLRTTDLLDGSKYE 280 Query: 237 VSLNDSG-IAQGGIVDTPSG----SWYAMLFRDSGAVGRMSYLVP 276 G AQG +V+ +G SW+ FRD+ GR+ L+P Sbjct: 281 AKKYYLGAFAQGSLVEVDNGDGTTSWHGFFFRDTYPTGRIPGLIP 325 >gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grisea 70-15] Length = 560 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/286 (36%), Positives = 153/286 (53%), Gaps = 37/286 (12%) Query: 13 AATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNYVYDTYA 72 +ATFTNP ++ D PD DV RVG+V+Y T++T +PG PV KSYDL NW V++ Sbjct: 39 SATFTNPILWEDLPDIDVFRVGDVFYKTTSTFAFSPGAPVHKSYDLANWTPVSHSVPRLD 98 Query: 73 NGDAQNLNN-GQNEYGRGSWASSLRYH--NGIYYVSFGSNSTGRTYIY-------QTTNI 122 G+ NLN G Y +G WASS+RY N ++Y STG+TY+Y + N Sbjct: 99 FGNEYNLNGAGSRAYVKGIWASSMRYRASNDMFYWMGCIQSTGKTYVYTSAGSRAKDNNG 158 Query: 123 ENGPW---TSSVLGSYYHDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVI 178 E W SSV+ Y+D +L DN +++VYG +++ +L+AD G+S+V Sbjct: 159 EAQSWNWKQSSVINKCYYDNGILVDDNDTMYVVYGNRKLTVAQLSAD-------GLSEV- 210 Query: 179 IPNSSNIAGSSFIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQV- 237 S S + EGAH+ KI G+Y++ P+ + RS S G Y +V Sbjct: 211 ---RSQQVYDSGDIYLEGAHMYKIKGFYWIV----PTKVASGEYVLRSRSPFGPYEARVL 263 Query: 238 ------SLNDSGIA-QGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 L+++G A QGG+VDT G+W+ + F D+ GR+ + P Sbjct: 264 FDNVPGPLSNAGWAHQGGMVDTKDGNWHYIAFLDAYPGGRIPVMAP 309 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 446,228,067 Number of extensions: 19962544 Number of successful extensions: 50059 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 49933 Number of HSP's successfully gapped: 75 Length of query: 276 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 152 Effective length of database: 420,565,302 Effective search space: 63925925904 Effective search space used: 63925925904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)