BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0002.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinso... 241 5e-63 pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum sa... 209 2e-53 ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl... 171 1e-41 gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grise... 130 1e-29 ref|NP_696699.1| possible extracellular exo-xylanase [Bifidobact... 125 7e-28 >ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinsonii] Length = 1266 Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/203 (55%), Positives = 150/203 (73%), Gaps = 5/203 (2%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 + + +SDEF S L WQWNHNP N+ WSLTQ+ G++RLT + ++L NT Sbjct: 573 MHNIVSSDEF---SQAAPLKLAWQWNHNPQNNYWSLTQKSGYLRLTNERTDPNVLMTTNT 629 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNAS--SG 118 LTQRTFGP+ +G T ++ GMKDGD AGL A Q +YG+VGVKM+G +KSIVMVN + +G Sbjct: 630 LTQRTFGPQCSGYTVIDVSGMKDGDYAGLVALQKQYGYVGVKMTGTTKSIVMVNGNDVTG 689 Query: 119 STTEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGY 178 + +VA+V L+QN +YL++ D+ NQTDKAYF YSL+G W S+G+TLQMSYT+P F+GY Sbjct: 690 TPAQVASVPLNQNIIYLRIDMDYRNQTDKAYFYYSLNGTTWQSIGSTLQMSYTIPQFIGY 749 Query: 179 RFALFNYATKSAGGYADFDYLRL 201 R+ LF YA+ SAGGYADFD+ R+ Sbjct: 750 RYGLFTYASVSAGGYADFDFFRI 772 >pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum saccharolyticum gb|AAB87371.1| xylanase [Caldicellulosiruptor saccharolyticus] Length = 1347 Score = 209 bits (533), Expect = 2e-53, Method: Composition-based stats. Identities = 105/193 (54%), Positives = 126/193 (65%), Gaps = 7/193 (3%) Query: 9 EFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNTLTQRTFGP 68 E AP+G L WQWNHNPDNSKWSL +R+GF+RL T V + + ARNTLTQRT GP Sbjct: 535 EEVAPNGSV-LNLTWQWNHNPDNSKWSLLERKGFLRLKTCNVVSDIQQARNTLTQRTLGP 593 Query: 69 KSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGSTTEVANVLL 128 K +G ++ MKDGD AGLAAFQ +YGF+GVK IVMV EV L Sbjct: 594 KCSGWILMDVRNMKDGDYAGLAAFQKEYGFIGVKKQDKEFYIVMVEKGK----EVEYTKL 649 Query: 129 SQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRFALFNYATK 188 Q+ VYLK+ DF + DKAYF YS +G NW G+ L M YT+PHFMGYRFA+FN+ATK Sbjct: 650 QQSMVYLKI--DFDFEIDKAYFYYSYNGINWIKFGSDLTMRYTIPHFMGYRFAIFNFATK 707 Query: 189 SAGGYADFDYLRL 201 GGY D D+ + Sbjct: 708 QTGGYVDIDFFKF 720 >ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] gb|AAK76859.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] Length = 531 Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 12/203 (5%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 +K D+FT S G L++ WQWNHNPDNSKW+ ++R G+MRL T S L ARNT Sbjct: 336 IKSPGTDDDFT--SQGYVLSQ-WQWNHNPDNSKWTTSERPGWMRLKT-SYSKDFLQARNT 391 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGST 120 LTQR GP S+G L+T +K G ++GL+AF +KYG++GV+ +K +V N +GS Sbjct: 392 LTQRIQGPASSGWVKLDTTNIKPGQISGLSAFHSKYGYIGVRNDNGTKKLVQYNV-TGSE 450 Query: 121 TEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLP-HFMGYR 179 T + L+ N VYLKV D QT K Y+SY +GN+WT LG+TL+M + F+GYR Sbjct: 451 TAIN---LTNNIVYLKVSTDCNAQTAKFYYSY--NGNSWTQLGSTLKMDFFYKLWFVGYR 505 Query: 180 FALFNYATKS-AGGYADFDYLRL 201 FALFNY T S GYADFDY + Sbjct: 506 FALFNYTTGSDTSGYADFDYFKF 528 >gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grisea 70-15] Length = 560 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 16 GTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNTLTQRTFGPKSTGVTA 75 G+ L W+WNHNPD SK+ L G + L T V+ L +ARNTLT R GP++T Sbjct: 353 GSALGPRWEWNHNPDASKFRLAGGSGGLVLQTATVTDDLFNARNTLTHRITGPRTTATLQ 412 Query: 76 LETGGMKDGDVAGLAAFQAKYGFVGV-KMSGNSKSIVM--VNASSGSTTEVANVLLSQ-- 130 L+ M+DGD AGLA F+ K G++GV + +GN++ + + VN SG TE +++ Sbjct: 413 LDISQMRDGDRAGLAMFRDKAGYIGVHRANGNAQLVRLNGVNLGSGWVTESKGSVVATGP 472 Query: 131 ----NRVYLKVVCDFT-----NQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRFA 181 +V+L+V D T +A FSYS DGN +T+LG + M F GYRF Sbjct: 473 NVTGGKVWLRVDADITPAFGLQPVRQANFSYSTDGNTFTNLGPSFTMINEWNFFTGYRFG 532 Query: 182 LFNYATKSAGG 192 +FN+AT++ GG Sbjct: 533 VFNFATQALGG 543 >ref|NP_696699.1| possible extracellular exo-xylanase [Bifidobacterium longum NCC2705] gb|AAN25335.1| possible extracellular exo-xylanase [Bifidobacterium longum NCC2705] Length = 958 Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 117/242 (48%), Gaps = 43/242 (17%) Query: 2 KKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTG-KVS--------- 51 +K Y E P+G + L VW+W HNPDN WSLT R+G++RLT G KVS Sbjct: 564 EKEYPVAEEYQPNG-SNLDLVWEWGHNPDNRYWSLTDREGWLRLTNGHKVSATAKYMKGT 622 Query: 52 ----TSLLDARNTLTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNS 107 T ARN L+QRTFG + T ++ MKDGD AGLA + + + V+ Sbjct: 623 YGDLTYFETARNVLSQRTFGGSMSVETHMDVSHMKDGDTAGLATYTRSFAYAAVRQENGQ 682 Query: 108 KSIVMV-----NASSGSTTEVANVLLSQN------------------RVYLKVVCDFTNQ 144 +++ +V N + + + + ++ V++K N Sbjct: 683 RTLGVVKRVYDNGVKDADGNIVDDTIDRDAEEAFVSGGTVTLPDDATNVWIKSDNTLDNA 742 Query: 145 TDK--AYFSYSLDGNNWTSLGN---TLQMSYTLPHFMGYRFALFNYATKSAGGYADFDYL 199 + K + YSLDG W+ LG+ L ++L HF GYR LFNYA ++ GGY DFDY Sbjct: 743 SGKLTIQYWYSLDGKQWSKLGDEQGPLTYDWSLSHFKGYRIGLFNYAKENTGGYVDFDYY 802 Query: 200 RL 201 L Sbjct: 803 DL 804 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 314,251,119 Number of extensions: 12263426 Number of successful extensions: 28947 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 28923 Number of HSP's successfully gapped: 15 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)