BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0267.0008.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240908.1| thymidylate kinase [Bacillus halodurans] >gi|14... 243 3e-63 ref|NP_653978.1| Thymidylate_kin, Thymidylate kinase [Bacillus a... 242 5e-63 ref|NP_690957.1| thymidylate kinase [Oceanobacillus iheyensis HT... 241 7e-63 ref|NP_829933.1| Thymidylate kinase [Bacillus cereus ATCC 14579]... 240 2e-62 ref|NP_976356.1| thymidylate kinase [Bacillus cereus ATCC 10987]... 239 2e-62 >ref|NP_240908.1| thymidylate kinase [Bacillus halodurans] sp|Q9KGL9|KTHY_BACHD Thymidylate kinase pir||B83655 thymidylate kinase tmk [imported] - Bacillus halodurans (strain C-125) dbj|BAB03761.1| thymidylate kinase [Bacillus halodurans] Length = 210 Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 153/206 (74%) Query: 4 EGFFITLEGGDGSGKTTVLGRVAAYLQNHSMPYLITREPGGIEIAEKIRSIILDPAHTAM 63 +G FIT+EGG+G+GKT+ L + L+ + + + TREPGGI IAE+IRSIILD HT M Sbjct: 3 KGCFITVEGGEGAGKTSALDAIEEMLRENGLSVVRTREPGGIPIAEQIRSIILDVDHTRM 62 Query: 64 DARTEALLYAASRSQHLAEVVEPALKEGLTVLCDRFVDSSLVYQGYARGLGIEEVRSINQ 123 D RTEALLYAA+R QHL E V PAL+ G VLCDRF+DSSL YQGYARG+G E++ +IN+ Sbjct: 63 DPRTEALLYAAARRQHLVEKVLPALEAGHVVLCDRFIDSSLAYQGYARGIGFEDILAINE 122 Query: 124 FATGGLMPDLTFYLDVDPEVGLSRIAANQDREVNRLDLESMAFHQKVREGYRQVVESDPQ 183 FA G PDLT VDP+VGLSRI +Q RE NRLD E++ FHQKV+EGY ++VE+ P+ Sbjct: 123 FAIEGRYPDLTLLFRVDPDVGLSRIHRDQSREQNRLDQEALTFHQKVKEGYERIVETYPE 182 Query: 184 RIVVLDANRPIHMVEQDIVQTLKDRI 209 R+V +DAN+ V D V+ +K R+ Sbjct: 183 RVVEIDANQSFDQVVADAVRMIKQRL 208 >ref|NP_653978.1| Thymidylate_kin, Thymidylate kinase [Bacillus anthracis A2012] ref|NP_842597.1| thymidylate kinase [Bacillus anthracis str. Ames] gb|AAP24083.1| thymidylate kinase [Bacillus anthracis str. Ames] Length = 208 Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/207 (54%), Positives = 157/207 (75%) Query: 4 EGFFITLEGGDGSGKTTVLGRVAAYLQNHSMPYLITREPGGIEIAEKIRSIILDPAHTAM 63 +G F+T+EG +GSGKTT++ + Y + + TREPGGI I+E IR+I+ +T M Sbjct: 2 KGLFVTIEGPEGSGKTTLIQSLLPYFEQKEQKVMATREPGGIAISEDIRTILHKQEYTMM 61 Query: 64 DARTEALLYAASRSQHLAEVVEPALKEGLTVLCDRFVDSSLVYQGYARGLGIEEVRSINQ 123 +ARTEALLYAA+R QHL E V PAL E VLCDRF+DSSL YQGYARGLG+++V IN+ Sbjct: 62 EARTEALLYAAARRQHLVEKVMPALNEDYLVLCDRFIDSSLAYQGYARGLGMDKVFEINR 121 Query: 124 FATGGLMPDLTFYLDVDPEVGLSRIAANQDREVNRLDLESMAFHQKVREGYRQVVESDPQ 183 FAT MP LT YLD++PEVGL+RIA + REVNRLD+E ++FH++VREGY QVVE Sbjct: 122 FATEDCMPSLTIYLDIEPEVGLARIAKDAGREVNRLDMEDISFHKRVREGYLQVVERFSD 181 Query: 184 RIVVLDANRPIHMVEQDIVQTLKDRIL 210 RIV+++A++P+ + ++++Q ++D++L Sbjct: 182 RIVLVNADQPMEKLIEEVIQVIEDKLL 208 >ref|NP_690957.1| thymidylate kinase [Oceanobacillus iheyensis HTE831] dbj|BAC11992.1| thymidylate kinase [Oceanobacillus iheyensis HTE831] Length = 225 Score = 241 bits (615), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 116/201 (57%), Positives = 148/201 (73%) Query: 5 GFFITLEGGDGSGKTTVLGRVAAYLQNHSMPYLITREPGGIEIAEKIRSIILDPAHTAMD 64 G FIT EGG+G+GKTTV+ + L + + TREPGGI+I+EKIRSII DP H M+ Sbjct: 3 GLFITFEGGEGAGKTTVIQHIFQKLIAQGIDVIQTREPGGIKISEKIRSIIHDPEHLEME 62 Query: 65 ARTEALLYAASRSQHLAEVVEPALKEGLTVLCDRFVDSSLVYQGYARGLGIEEVRSINQF 124 RTEALLYAA+R QHL E V PAL++G VLCDRFVDSSL YQGYARGLGI+EV +IN F Sbjct: 63 ERTEALLYAAARRQHLVEKVFPALEQGKVVLCDRFVDSSLAYQGYARGLGIDEVYAINHF 122 Query: 125 ATGGLMPDLTFYLDVDPEVGLSRIAANQDREVNRLDLESMAFHQKVREGYRQVVESDPQR 184 MPDLT + D++P+ GL RIAAN++RE NRLDLE+M FH+ V EGY++V+ P+R Sbjct: 123 VIQDCMPDLTLFFDIEPKKGLERIAANKNRERNRLDLENMQFHEAVYEGYQKVIARFPER 182 Query: 185 IVVLDANRPIHMVEQDIVQTL 205 I + A + + VEQD ++ + Sbjct: 183 IKTIQAEQALEAVEQDTMEII 203 >ref|NP_829933.1| Thymidylate kinase [Bacillus cereus ATCC 14579] gb|AAP07134.1| Thymidylate kinase [Bacillus cereus ATCC 14579] Length = 208 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/207 (54%), Positives = 157/207 (75%) Query: 4 EGFFITLEGGDGSGKTTVLGRVAAYLQNHSMPYLITREPGGIEIAEKIRSIILDPAHTAM 63 +G F+T+EG +GSGKTT++ + Y + + + TREPGGI I+E IR+I+ +T M Sbjct: 2 KGLFVTIEGPEGSGKTTLIKSLLPYFEQKAQKVMATREPGGIAISEDIRTILHKQEYTMM 61 Query: 64 DARTEALLYAASRSQHLAEVVEPALKEGLTVLCDRFVDSSLVYQGYARGLGIEEVRSINQ 123 +ARTEALLYAA+R QHL E V PAL E VLCDRF+DSSL YQGYARGLG++++ IN+ Sbjct: 62 EARTEALLYAAARRQHLVEKVMPALNEDYLVLCDRFIDSSLAYQGYARGLGMDKIFEINR 121 Query: 124 FATGGLMPDLTFYLDVDPEVGLSRIAANQDREVNRLDLESMAFHQKVREGYRQVVESDPQ 183 FAT MP LT YLD++PEVGL+RI + REVNRLD+E ++FH++VREGY QVVE Sbjct: 122 FATEDCMPSLTIYLDIEPEVGLARIEKDAGREVNRLDMEDISFHKRVREGYLQVVERFSD 181 Query: 184 RIVVLDANRPIHMVEQDIVQTLKDRIL 210 RIV+++A++P+ + +++VQ ++D++L Sbjct: 182 RIVLVNADQPMEKLIEEVVQIIEDKLL 208 >ref|NP_976356.1| thymidylate kinase [Bacillus cereus ATCC 10987] gb|AAS38964.1| thymidylate kinase [Bacillus cereus ATCC 10987] Length = 208 Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/207 (54%), Positives = 156/207 (75%) Query: 4 EGFFITLEGGDGSGKTTVLGRVAAYLQNHSMPYLITREPGGIEIAEKIRSIILDPAHTAM 63 +G F+T+EG +GSGKTT++ + Y + + TREPGGI I+E IR+I+ +T M Sbjct: 2 KGLFVTIEGPEGSGKTTLIQGLLPYFEQKEQKVMATREPGGIAISEDIRTILHKQEYTMM 61 Query: 64 DARTEALLYAASRSQHLAEVVEPALKEGLTVLCDRFVDSSLVYQGYARGLGIEEVRSINQ 123 +ARTEALLYAA+R QHL E V PAL E VLCDRF+DSSL YQGYARGLG+++V IN+ Sbjct: 62 EARTEALLYAAARRQHLVEKVMPALDEDYLVLCDRFIDSSLAYQGYARGLGMDKVFEINR 121 Query: 124 FATGGLMPDLTFYLDVDPEVGLSRIAANQDREVNRLDLESMAFHQKVREGYRQVVESDPQ 183 FAT MP LT YLD++PEVGL+RIA + REVNRLD+E + FH++VREGY QVVE Sbjct: 122 FATEDCMPSLTIYLDIEPEVGLARIAKDAGREVNRLDMEDITFHKRVREGYLQVVERFSD 181 Query: 184 RIVVLDANRPIHMVEQDIVQTLKDRIL 210 RIV+++A++P+ + ++++Q ++D++L Sbjct: 182 RIVLVNADQPMEKLIEEVIQVIEDKLL 208 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,620,180 Number of extensions: 11114426 Number of successful extensions: 51781 Number of sequences better than 1.0e-05: 564 Number of HSP's gapped: 51061 Number of HSP's successfully gapped: 564 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)