BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0006.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833246.1| hypothetical protein [Bacillus cereus ATCC 1457... 154 1e-36 ref|NP_658667.1| hypothetical protein predicted by GeneMark [Bac... 142 7e-33 ref|NP_834341.1| hypothetical protein [Bacillus cereus ATCC 1457... 142 7e-33 ref|NP_981064.1| hypothetical protein BCE4771 [Bacillus cereus A... 140 1e-32 >ref|NP_833246.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP10447.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 224 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 17/224 (7%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN +IQ +Y +I SLG C +Q+ RH LR G LDW P+LS V+ LL+NRF F Sbjct: 1 MNLEDIQKSYGVIVSLGGLCQVTNQIKRHNLRTFSGPLDWFYYPSLSDVNKLLQNRFKKF 60 Query: 63 MELPNLAITG----------INEKAK-----CYIVRDAAYYIFSHHDFPLNQNTPTQLVS 107 M+L N+ I G + + K Y ++D Y FS HDFP+N + + Sbjct: 61 MKLENMVIEGSESYGLIESEFDNQIKWAERITYCIKDTYYNCFSMHDFPINSEKDLK-ST 119 Query: 108 YPELREKIARRVPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVIN-Q 166 YP + K+ R+ RFLE + S+ ILFIR G E EL +VL ++ + +FN+L++N + Sbjct: 120 YPSFKAKLDTRINRFLEKINSSESILFIRIWGNRDEAVELQNVLSKITNKDFNILIVNFK 179 Query: 167 APVGGIVETPWPFPNVCALQIPGVPDEFHDNDDLWKNILDRFTV 210 + IVE W VC++++P D + +D W IL++ T+ Sbjct: 180 EGISNIVEQNWGISRVCSIELPRYQDRWEGDDSDWDVILNKITL 223 >ref|NP_658667.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847086.1| hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28572.1| hypothetical protein BA4886 [Bacillus anthracis str. Ames] Length = 211 Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 1/209 (0%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN ++I+ Y +FSLG+NC A L + L GV+D++ SP+L V+ LL+NRF F Sbjct: 1 MNLSDIKKEYHAVFSLGQNCWPAWALYQFELSPFFGVIDFMLSPSLEKVNVLLQNRFDRF 60 Query: 63 MELPNLAITGINEKAKCYIVRDAAYYIFSHHDFPLNQNTPTQLVSYPELREKIARRVPRF 122 ++ NL+ + +RD Y I S HDF + NTPT SY E++ R+ RF Sbjct: 61 LQFENLSFISFWDDDAKLRLRDNLYEIDSCHDFKTDVNTPTSWPSYTEIKLNYEHRINRF 120 Query: 123 LETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVINQAPVGGIVETPWPFPNV 182 L T+ +A ILFIRT GT E L +L ++V +F+VL++ A V +VE W ++ Sbjct: 121 LTTIETAESILFIRTGGTYEEARSLEHILSQIVKHKFSVLLLIPADVPNVVEEDWGLQHI 180 Query: 183 CALQIPGVPDEFHDNDDLWKNILDRFTVR 211 C ++ P + D + N+ W ++ D T+R Sbjct: 181 CVIKCP-IMDVYQYNEVFWNDLFDGITIR 208 >ref|NP_834341.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP11542.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 211 Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 1/209 (0%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN ++I+ Y+ +FSLG+NC A L + L GV+D++ SP+L V+ LL+NRF F Sbjct: 1 MNLSDIKKEYNAVFSLGQNCWPAWALYQLELSPFFGVIDFMLSPSLEKVNVLLQNRFDRF 60 Query: 63 MELPNLAITGINEKAKCYIVRDAAYYIFSHHDFPLNQNTPTQLVSYPELREKIARRVPRF 122 + NL+ + +RD Y I S HDF + NTPT SY E++ R+ RF Sbjct: 61 LNFENLSFISFWDDDAKLRLRDNLYEIDSCHDFKTDVNTPTSWPSYTEIKLNYEHRINRF 120 Query: 123 LETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVINQAPVGGIVETPWPFPNV 182 L T+ +A ILFIRT GT E L +L ++V+ F+VL++ A + I + W + Sbjct: 121 LATIETAESILFIRTGGTYEEACSLEQILSQIVTHTFSVLLLIPADIPTITQEDWGLQRI 180 Query: 183 CALQIPGVPDEFHDNDDLWKNILDRFTVR 211 C ++ P + D + N+ WK++ D TVR Sbjct: 181 CVMKCP-IMDVYQYNEAFWKDLFDGITVR 208 >ref|NP_981064.1| hypothetical protein BCE4771 [Bacillus cereus ATCC 10987] gb|AAS43672.1| hypothetical protein BCE4771 [Bacillus cereus ATCC 10987] Length = 211 Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 1/209 (0%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN ++I+ Y +FSLG+NC A L + L GV+D++ SP+L V+ LL+NRF F Sbjct: 1 MNLSDIKKEYHAVFSLGQNCWPAWALYQFKLSPFFGVIDFMLSPSLEKVNILLQNRFDRF 60 Query: 63 MELPNLAITGINEKAKCYIVRDAAYYIFSHHDFPLNQNTPTQLVSYPELREKIARRVPRF 122 ++L NL+ + +RD Y I S HDF + NTPT SY E++ R+ RF Sbjct: 61 LQLENLSFISFWDDGAKLRLRDNLYEIDSCHDFKTDVNTPTSWPSYTEIKLNYEHRITRF 120 Query: 123 LETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVINQAPVGGIVETPWPFPNV 182 L T+ +A ILFIRT GT E L +L ++V+ F+VL++ V + E W N+ Sbjct: 121 LNTIETAQSILFIRTGGTYEEARSLEQILSQIVTHTFSVLLLIPEDVPTVTEEDWGLQNI 180 Query: 183 CALQIPGVPDEFHDNDDLWKNILDRFTVR 211 C ++ P + D F N+ W ++ + +R Sbjct: 181 CVIKCP-IMDVFQYNEAFWNDLFNGIVIR 208 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 325,690,482 Number of extensions: 13140974 Number of successful extensions: 28455 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 28450 Number of HSP's successfully gapped: 4 Length of query: 211 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 91 Effective length of database: 431,425,698 Effective search space: 39259738518 Effective search space used: 39259738518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)