BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0266.0002.p
         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_349008.1| Uncharacterized ABC transporter, ATPase compone...    76   2e-13
ref|ZP_00184098.1| hypothetical protein Exigu038701 [Exiguobacte...    72   4e-12
ref|NP_349876.1| ABC-type multidrug/protein/lipid transport syst...    71   7e-12
ref|ZP_00097446.1| COG1132: ABC-type multidrug transport system,...    70   1e-11
ref|ZP_00036668.1| COG1132: ABC-type multidrug transport system,...    70   1e-11

>ref|NP_349008.1| Uncharacterized ABC transporter, ATPase component [Clostridium
           acetobutylicum]
 pir||A97195 uncharacterized ABC transporter, ATPase component CAC2393
           [imported] - Clostridium acetobutylicum
 gb|AAK80348.1| Uncharacterized ABC transporter, ATPase component [Clostridium
           acetobutylicum]
          Length = 577

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 45/54 (83%)

Query: 1   MTVLLVSQRVSTVRQADVIIVFDEGRIAGIGTHEALLESCGVYQDICGSQLSTE 54
           MTVL+V+QR+ST++ AD+IIV D+G++AG+GTH  LLE   VY++IC SQLS E
Sbjct: 522 MTVLMVTQRISTIKDADLIIVLDDGKVAGVGTHNELLEESEVYKEICNSQLSKE 575


>ref|ZP_00184098.1| hypothetical protein Exigu038701 [Exiguobacterium sp. 255-15]
          Length = 328

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 43/54 (79%)

Query: 2   TVLLVSQRVSTVRQADVIIVFDEGRIAGIGTHEALLESCGVYQDICGSQLSTEE 55
           TVL+V+QRVSTV  AD IIV +EGR+AGIGTH+ L E+  VYQ+I  SQLS EE
Sbjct: 273 TVLIVAQRVSTVMDADQIIVLEEGRVAGIGTHDELYETNEVYQEIVKSQLSEEE 326


>ref|NP_349876.1| ABC-type multidrug/protein/lipid transport system, ATPase component
           [Clostridium acetobutylicum]
 pir||E97303 ABC-type multidrug/protein/lipid transport system, ATPase component
           CAC3282 [imported] - Clostridium acetobutylicum
 gb|AAK81216.1| ABC-type multidrug/protein/lipid transport system, ATPase component
           [Clostridium acetobutylicum]
          Length = 584

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 2   TVLLVSQRVSTVRQADVIIVFDEGRIAGIGTHEALLESCGVYQDICGSQLSTEE 55
           TV++V+QRVST+  AD IIV DEG++ GIGTH+ LL +C VY +I  SQLS EE
Sbjct: 529 TVIIVAQRVSTIMNADRIIVLDEGKVVGIGTHKELLNNCDVYHEIVASQLSEEE 582


>ref|ZP_00097446.1| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Desulfitobacterium hafniense]
          Length = 292

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 41/54 (75%)

Query: 2   TVLLVSQRVSTVRQADVIIVFDEGRIAGIGTHEALLESCGVYQDICGSQLSTEE 55
           T+LLV+QRVST+  A+ IIV D GRI G GTH  LL++C VYQ+I  SQLS EE
Sbjct: 236 TILLVAQRVSTIMNAEQIIVLDNGRIVGKGTHNELLQTCEVYQEIAYSQLSEEE 289


>ref|ZP_00036668.1| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Enterococcus faecium]
          Length = 317

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 2   TVLLVSQRVSTVRQADVIIVFDEGRIAGIGTHEALLESCGVYQDICGSQLSTEE 55
           TVL+V+QRV T+  AD IIV +EG + G+GTH  LLE C +Y DI  SQLS EE
Sbjct: 262 TVLIVAQRVGTIMHADKIIVLNEGEVVGMGTHRELLEKCPIYYDIAASQLSKEE 315


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 64,629,193
Number of extensions: 1573873
Number of successful extensions: 7951
Number of sequences better than 1.0e-05: 115
Number of HSP's gapped: 7958
Number of HSP's successfully gapped: 115
Length of query: 59
Length of database: 757,237,578
Length adjustment: 31
Effective length of query: 28
Effective length of database: 673,069,509
Effective search space: 18845946252
Effective search space used: 18845946252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)