BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0001.p (579 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349007.1| Uncharacterized ABC transporter, ATPase compone... 606 e-172 ref|NP_814679.1| ABC transporter, ATP-binding/permease protein [... 517 e-145 ref|NP_816233.1| ABC transporter, ATP-binding/permease protein [... 487 e-136 ref|NP_561443.1| probable ABC transporter [Clostridium perfringe... 487 e-136 ref|NP_349875.1| ABC-type multidrug/protein/lipid transport syst... 485 e-135 >ref|NP_349007.1| Uncharacterized ABC transporter, ATPase component [Clostridium acetobutylicum] pir||H97194 uncharacterized ABC transporter, ATPase component CAC2392 [imported] - Clostridium acetobutylicum gb|AAK80347.1| Uncharacterized ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 579 Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust. Identities = 296/571 (51%), Positives = 400/571 (70%) Query: 6 TWKRIIVYTKQHRGIAIAAVFCAILSVVASLIGPLLIGRTVDQMAGLGQVDFDQVLRLLL 65 T R+ Y +++ ++ A++S V PL++G+ +D + G+VDF+ +L++++ Sbjct: 5 TLFRLASYVGKYKMYMFISLIFALISNVLIAFMPLIVGKGIDNIKSQGKVDFNNLLKIII 64 Query: 66 ILAAVYIAGSFFGWLLTYYTNRIAYRTVYDLRRELFDKLNVLPLKFHDNHPQGDSISRFV 125 +LAAVY+ S F WL T N +AY TV DLR E K++ LPLK+ D +P GD +SR Sbjct: 65 VLAAVYLISSIFTWLFTAVANILAYNTVRDLRNEALSKISTLPLKYFDVNPHGDIMSRLT 124 Query: 126 NDMDAVSDGLLQGFSTLLTGVVTIAGAIGLMLYISPVMTLVVLLSAPAAFYVARFITTRS 185 NDMDA+SDGL QG + +VTI +I LML +S +T +++L P F++A FIT RS Sbjct: 125 NDMDAISDGLFQGITQFFPAIVTIISSILLMLSLSIKLTGIIILMTPLCFFIASFITKRS 184 Query: 186 QKLFREQARILGGLNGYVEEIVGGQKVVQAFRYEDHSFAEFSGRNNELYQTGVKAQFYGS 245 K+F++Q +G LNGY+EEI+G +K+V+ F YE + +FS N+ LY G AQFY S Sbjct: 185 NKMFKQQQNTVGELNGYIEEIIGNEKIVKLFGYEKRAEKKFSEINSRLYNCGQLAQFYSS 244 Query: 246 LSNPSTRLVNNITFSVIAMIGSALVIGGHFTVGDLSSFLIYSNLFAKPFNEITGVITQLQ 305 L+NPSTR VNNIT+ ++ +G L + ++G +SSFL YS F++P N +TGV TQLQ Sbjct: 245 LTNPSTRFVNNITYVLVGAVGGLLAVLSGLSIGTISSFLTYSTQFSQPINNVTGVATQLQ 304 Query: 306 SATASAQRIFAILDLPPETQDAEDARVLGISQGTIQFDNVSFAYSPERPLIRNFSLEVKP 365 +A ASA+R+F+ILD PE +D E A+ +G I F+NVSF+Y+ ++PLI NFS+++K Sbjct: 305 AAFASAERVFSILDEIPEKKDNEGAKKFEHCEGNISFNNVSFSYNKKQPLIENFSVDIKK 364 Query: 366 GTRVAIVGQTGAGKTTLVNLLMRFYDVDSGSIKLDGTDIRAITRDSLRRNFGMVLQDTWL 425 G+ +AIVG TGAGKTT+VNLLMRFYD+D G I +DG DI + R+ +R FGMVLQDTWL Sbjct: 365 GSTIAIVGPTGAGKTTMVNLLMRFYDIDGGKITIDGKDINKMKRNDVRGQFGMVLQDTWL 424 Query: 426 YGGTIRDNIAYGKPXXXXXXXXXXXXXXXXHSFIKRLPEGYATKISGSGDNLSQGQKQLL 485 + GTI++NIAYGKP H+FIKRL +GY T+I+ SG NLS+GQKQLL Sbjct: 425 FEGTIKENIAYGKPDASMEEIESAAKKAYIHNFIKRLSDGYDTRITESGGNLSEGQKQLL 484 Query: 486 TIARVMLADPPMLILDEATSSIDTLTEARIQKAFLAMISGRTSFVIAHRLSTIREADVIL 545 TIARVML +PPMLILDEATSS+DT TE +IQ AFL M+ GRTSFVIAHRLSTI++AD+IL Sbjct: 485 TIARVMLINPPMLILDEATSSVDTRTEIKIQNAFLKMMEGRTSFVIAHRLSTIKDADLIL 544 Query: 546 YMKDGDIVESGTHEELLQRGGHYARLYNSQF 576 MK+G IVE G HEEL+ G Y +Y SQF Sbjct: 545 VMKNGHIVERGKHEELVNSEGLYREIYESQF 575 >ref|NP_814679.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] gb|AAO80749.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] Length = 588 Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust. Identities = 261/558 (46%), Positives = 376/558 (67%), Gaps = 3/558 (0%) Query: 22 IAAVFCAILSVVASLIGPLLIGRTVDQMAGLGQVDFDQVLRLLLILAAVYIAGSFFGWLL 81 I A+ ILS ++++ IG++VD M G GQV+ Q++++L +LA + + WL+ Sbjct: 26 IGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVNAAQLIKILGLLAGILLVTVLSQWLI 85 Query: 82 TYYTNRIAYRTVYDLRRELFDKLNVLPLKFHDNHPQGDSISRFVNDMDAVSDGLLQGFST 141 NR++Y + LR++ F LN LPL ++D G+ +SRF ND+D +S F+ Sbjct: 86 QRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTSHGNIVSRFTNDIDNISMACSAVFNQ 145 Query: 142 LLTGVVTIAGAIGLMLYISPVMTLVVLLSAPAAFYVARFITTRSQKLFREQARILGGLNG 201 L +G+ T+ A+ M+ +SP++TLVVL+S P F V + SQK F Q I+G ++G Sbjct: 146 LFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFIVNWLVAKASQKNFAAQQTIVGEISG 205 Query: 202 YVEEIVGGQKVVQAFRYEDHSFAEFSGRNNELYQTGVKAQFYGSLSNPSTRLVNNITFSV 261 +V E+VG QK+V+AF+ E + F N LY+ G KAQF SL+NP +R ++++++ Sbjct: 206 FVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEKGQKAQFSSSLTNPLSRFIDHLSYLS 265 Query: 262 IAMIGSALVIGGH--FTVGDLSSFLIYSNLFAKPFNEITGVITQLQSATASAQRIFAILD 319 I ++G LV+ G+ TVG +SSF IYS+ F+KPF E++G+ Q+Q+A A +R F ++D Sbjct: 266 IGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPFIELSGITNQIQAALAGLERTFDMMD 325 Query: 320 LPPETQDAEDARVLGISQGTIQFDNVSFAYSPERPLIRNFSLEVKPGTRVAIVGQTGAGK 379 P E DA +A VL ++G ++F +V F+Y+P RPLI NF+L +PG +AIVG+TGAGK Sbjct: 326 QPVERPDASNAIVLKEARGRVEFKDVDFSYTPTRPLIENFNLIAEPGETIAIVGRTGAGK 385 Query: 380 TTLVNLLMRFYDVDSGSIKLDGTDIRAITRDSLRRNFGMVLQDTWLYGGTIRDNIAYGKP 439 +TLVNLLMRFY+VD G I +D DI ITRDSLR++FGMVLQDTWL+ +IR+N+ YG P Sbjct: 386 STLVNLLMRFYEVDRGQITVDTHDITQITRDSLRKSFGMVLQDTWLFDSSIRENLTYGNP 445 Query: 440 XXXXXXXXXXXXXXXXHSFIKRLPEGYATKISGSGDNLSQGQKQLLTIARVMLADPPMLI 499 F+ RLP+G T+I G +S+GQ+QL+TIAR M+++PPMLI Sbjct: 446 EASDEEIIEAMKKAHIFDFVMRLPQGLDTEIGSQGVKISEGQRQLMTIARTMISNPPMLI 505 Query: 500 LDEATSSIDTLTEARIQKAFLAMISGRTSFVIAHRLSTIREADVILYMKDGDIVESGTHE 559 LDEATSS+DTLTE +IQ AFL M++GRTSFVIAHRL+TI+ A+ IL M +G +VE GTH+ Sbjct: 506 LDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHRLATIKSAEKILVMDNGQVVEIGTHD 565 Query: 560 ELLQR-GGHYARLYNSQF 576 ELLQ+ G+Y LY +QF Sbjct: 566 ELLQKEQGYYRDLYEAQF 583 >ref|NP_816233.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] gb|AAO82303.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] Length = 622 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/592 (42%), Positives = 361/592 (60%), Gaps = 16/592 (2%) Query: 2 NAGATWKRIIVYTKQHRGIAIAAVFCAILSVVASLIGPLLIGRTVDQ-----MAGLGQ-- 54 N T KR+ Y + IA + AI +VV + P ++G+ + M G + Sbjct: 27 NFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQIQTPKVLGQATTEIFKGVMKGAAEMK 86 Query: 55 ---------VDFDQVLRLLLILAAVYIAGSFFGWLLTYYTNRIAYRTVYDLRRELFDKLN 105 +DFD++ ++LLI+ A+Y+ + F +L R++ RTVY+LR+EL K+N Sbjct: 87 QGLKITSFPIDFDKIGQILLIVIAMYLISAVFNFLQQVIMTRVSQRTVYELRQELEAKMN 146 Query: 106 VLPLKFHDNHPQGDSISRFVNDMDAVSDGLLQGFSTLLTGVVTIAGAIGLMLYISPVMTL 165 +P+ ++D H GD +SR +NDMD ++ L Q + L+T +VT G + +ML IS +TL Sbjct: 147 KVPISYYDTHSNGDIMSRAINDMDNIASTLQQNLTQLITSIVTFVGVLWMMLTISWQLTL 206 Query: 166 VVLLSAPAAFYVARFITTRSQKLFREQARILGGLNGYVEEIVGGQKVVQAFRYEDHSFAE 225 + L + P + V + RSQK F Q + LG LN VEE GG VV++F +E+ Sbjct: 207 IALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLLNNQVEETYGGHVVVKSFNHEESDQEV 266 Query: 226 FSGRNNELYQTGVKAQFYGSLSNPSTRLVNNITFSVIAMIGSALVIGGHFTVGDLSSFLI 285 F N +LY G KAQF ++ P + N+ + +A++G V G +GD+ +FL Sbjct: 267 FEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGYVFVAVLGGVKVANGMMDLGDVQAFLQ 326 Query: 286 YSNLFAKPFNEITGVITQLQSATASAQRIFAILDLPPETQDAEDARVLGISQGTIQFDNV 345 Y+N F++P +I ++ +Q+ ASA+R+F +LD + V S + F++V Sbjct: 327 YTNQFSQPITQIANLMNTIQATVASAERVFEVLDEEEMVDEPSGIPVETDSPYRVSFEHV 386 Query: 346 SFAYSPERPLIRNFSLEVKPGTRVAIVGQTGAGKTTLVNLLMRFYDVDSGSIKLDGTDIR 405 +F YSPE+ L+++F+L VKPG VAIVG TGAGKTTL+NLL RFYD+ SGSIK DG D R Sbjct: 387 AFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGKTTLINLLERFYDISSGSIKYDGVDTR 446 Query: 406 AITRDSLRRNFGMVLQDTWLYGGTIRDNIAYGKPXXXXXXXXXXXXXXXXHSFIKRLPEG 465 ++R+ LR +F MVLQDTWL+ G+I DNI YG F+++LPEG Sbjct: 447 DLSREELRAHFSMVLQDTWLFTGSIYDNIHYGNEQASEEEVIRAAKAAHVDDFVRKLPEG 506 Query: 466 YATKISGSGDNLSQGQKQLLTIARVMLADPPMLILDEATSSIDTLTEARIQKAFLAMISG 525 Y T ++ N+SQGQ+QL+TIAR LA+P +LILDEATSS+DT TE IQ A ++ Sbjct: 507 YQTILNEEASNISQGQRQLITIARAFLANPDVLILDEATSSVDTRTEILIQAAMNRLLEN 566 Query: 526 RTSFVIAHRLSTIREADVILYMKDGDIVESGTHEELLQRGGHYARLYNSQFA 577 RTSFV+AHRLSTIR+AD I+ M +G IVE+GTH+EL+ + G YA LYNSQF+ Sbjct: 567 RTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHDELMAKNGFYADLYNSQFS 618 >ref|NP_561443.1| probable ABC transporter [Clostridium perfringens] dbj|BAB80233.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 618 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 252/582 (43%), Positives = 365/582 (62%), Gaps = 12/582 (2%) Query: 6 TWKRIIVYTKQHR-GIAIAAVFCAILSVVASLIGPLLIGRTVDQM-AGLGQ--------- 54 T K++ VY K + IAI +F AI S S++GP ++G+ ++ GL Q Sbjct: 32 TMKKLGVYLKPYSLSIAIVILF-AIGSAAFSIVGPKILGKATTKIFEGLVQKITGVPDAS 90 Query: 55 VDFDQVLRLLLILAAVYIAGSFFGWLLTYYTNRIAYRTVYDLRRELFDKLNVLPLKFHDN 114 +DF + + +IL A+Y+ S FG + ++ + +A + Y+LR+++ +K++ LPL + D Sbjct: 91 IDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDT 150 Query: 115 HPQGDSISRFVNDMDAVSDGLLQGFSTLLTGVVTIAGAIGLMLYISPVMTLVVLLSAPAA 174 G+ +SR ND+D V+ L Q S ++T VVT+ G + +M IS +MTL + P + Sbjct: 151 RTNGEVLSRITNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVS 210 Query: 175 FYVARFITTRSQKLFREQARILGGLNGYVEEIVGGQKVVQAFRYEDHSFAEFSGRNNELY 234 + + +SQK F+ Q LG LNG VEE+ GG +++AF E+ S +F NN LY Sbjct: 211 MVLISLVVKKSQKYFKSQQEYLGHLNGQVEEVYGGHNIMKAFNREEASTKDFDELNNTLY 270 Query: 235 QTGVKAQFYGSLSNPSTRLVNNITFSVIAMIGSALVIGGHFTVGDLSSFLIYSNLFAKPF 294 ++ K+QF + P V N+ + +++++G L I TVGD+ +F+ Y F +P Sbjct: 271 KSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFIQYVRSFNQPI 330 Query: 295 NEITGVITQLQSATASAQRIFAILDLPPETQDAEDARVLGISQGTIQFDNVSFAYSPERP 354 ++ V +QS A+A+R+F LD E +D ++ +G ++F++V F Y+ ++ Sbjct: 331 AQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKI 390 Query: 355 LIRNFSLEVKPGTRVAIVGQTGAGKTTLVNLLMRFYDVDSGSIKLDGTDIRAITRDSLRR 414 +I +FS++VKPG +VAIVG TGAGKTT+V LLMRFYD++SGSIK+DG DIR R LR Sbjct: 391 IINDFSVDVKPGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRN 450 Query: 415 NFGMVLQDTWLYGGTIRDNIAYGKPXXXXXXXXXXXXXXXXHSFIKRLPEGYATKISGSG 474 FGMVLQDTWL+ GTI +N+ YG+ F+K LP+GY ++ Sbjct: 451 LFGMVLQDTWLFNGTIMENLRYGRLDATDAEVKEAAKAAHVDHFVKTLPDGYNMVLNEEA 510 Query: 475 DNLSQGQKQLLTIARVMLADPPMLILDEATSSIDTLTEARIQKAFLAMISGRTSFVIAHR 534 N+SQGQKQLLTIAR L DP +LILDEATSS+DT TE IQKA ++ GRTSF+IAHR Sbjct: 511 SNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLMEGRTSFIIAHR 570 Query: 535 LSTIREADVILYMKDGDIVESGTHEELLQRGGHYARLYNSQF 576 LSTIR+AD+IL MKDGDIVE G HEELL++GG Y+ LYNSQF Sbjct: 571 LSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQF 612 >ref|NP_349875.1| ABC-type multidrug/protein/lipid transport system, ATPase component [Clostridium acetobutylicum] pir||D97303 ABC-type multidrug/protein/lipid transport system, ATPase component CAC3281 [imported] - Clostridium acetobutylicum gb|AAK81215.1| ABC-type multidrug/protein/lipid transport system, ATPase component [Clostridium acetobutylicum] Length = 706 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/525 (45%), Positives = 342/525 (65%) Query: 54 QVDFDQVLRLLLILAAVYIAGSFFGWLLTYYTNRIAYRTVYDLRRELFDKLNVLPLKFHD 113 ++DFD + ++L L +Y S F +L ++ +A +TVY++R+++ +KLN LPLKF D Sbjct: 175 KIDFDAIGVIILELIGLYAVASLFSFLQSFVMAGVAQKTVYNMRKDVDEKLNRLPLKFFD 234 Query: 114 NHPQGDSISRFVNDMDAVSDGLLQGFSTLLTGVVTIAGAIGLMLYISPVMTLVVLLSAPA 173 + G+ +SR ND+D V+ L Q + L+T ++ + G + +ML IS +TL+ +L+ P Sbjct: 235 SKTHGEILSRVTNDLDTVATTLQQSLTQLITAILQVIGVVIMMLTISGWLTLICVLTLPV 294 Query: 174 AFYVARFITTRSQKLFREQARILGGLNGYVEEIVGGQKVVQAFRYEDHSFAEFSGRNNEL 233 A +V FI +SQK F Q + LG +NG+VEE+ G VV+AF E S +F+ N+ L Sbjct: 295 AGFVTMFIAKKSQKFFAGQQKELGMINGHVEEMFTGHIVVKAFNKEQESIEKFNEINDRL 354 Query: 234 YQTGVKAQFYGSLSNPSTRLVNNITFSVIAMIGSALVIGGHFTVGDLSSFLIYSNLFAKP 293 Y++G KAQF + P +NNI + + + G G ++GD+ +F Y+ LF P Sbjct: 355 YKSGWKAQFISGIIFPLMNFINNIGYVAVCVAGGIFATKGMISIGDVQAFFQYNRLFTMP 414 Query: 294 FNEITGVITQLQSATASAQRIFAILDLPPETQDAEDARVLGISQGTIQFDNVSFAYSPER 353 + + +QS A+A+R+F +L+ E QDAED++++ +G ++F+NV F Y Sbjct: 415 IIQTANIANIIQSTMAAAERVFELLEEEEEIQDAEDSKIVEFPKGAVRFENVKFGYKEGS 474 Query: 354 PLIRNFSLEVKPGTRVAIVGQTGAGKTTLVNLLMRFYDVDSGSIKLDGTDIRAITRDSLR 413 LI + +L+VKPG VAIVG TGAGKTT+VNLLMRFY++++G I +DG + + + R+ LR Sbjct: 475 TLINDMNLDVKPGQTVAIVGPTGAGKTTIVNLLMRFYEINAGKITVDGVNTKEMKRNDLR 534 Query: 414 RNFGMVLQDTWLYGGTIRDNIAYGKPXXXXXXXXXXXXXXXXHSFIKRLPEGYATKISGS 473 FGMVLQDTWL+ GTIRDNIAY K FI+ LP+GY T I+ Sbjct: 535 GMFGMVLQDTWLFNGTIRDNIAYSKDGATEEEIIRAAKAAHADHFIRTLPDGYDTVINEE 594 Query: 474 GDNLSQGQKQLLTIARVMLADPPMLILDEATSSIDTLTEARIQKAFLAMISGRTSFVIAH 533 N+SQGQKQLLTIARV+LA+P +LILDEATSS+DT TE IQKA ++ GRTSFVIAH Sbjct: 595 ASNISQGQKQLLTIARVILANPQILILDEATSSVDTRTELAIQKAMNNLMQGRTSFVIAH 654 Query: 534 RLSTIREADVILYMKDGDIVESGTHEELLQRGGHYARLYNSQFAA 578 RLSTIR+AD+IL M G ++E G HEELL++ G YA LYNSQF + Sbjct: 655 RLSTIRDADLILVMNQGSVIEQGNHEELLEKKGFYADLYNSQFTS 699 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 775,430,246 Number of extensions: 30373690 Number of successful extensions: 166837 Number of sequences better than 1.0e-05: 9738 Number of HSP's gapped: 157768 Number of HSP's successfully gapped: 10580 Length of query: 579 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 448 Effective length of database: 401,559,609 Effective search space: 179898704832 Effective search space used: 179898704832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)