BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0021.p
         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658440.1| hypothetical protein predicted by GeneMark [Bac...    56   2e-07
ref|NP_834118.1| hypothetical protein [Bacillus cereus ATCC 1457...    56   2e-07
ref|NP_692949.1| hypothetical protein OB2028 [Oceanobacillus ihe...    53   3e-06

>ref|NP_658440.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_846859.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28345.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 94

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 14 EIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRN----YDKEGRPALHKLVNDIYSLKANS 69
          +++ +  SK EEF++ GY+ VT  DIW           D + R  L++LVND+ ++ AN 
Sbjct: 14 QLQVVLESKVEEFQMFGYDRVTDDDIWKFLKVKKWKKIDSDVR--LYELVNDVLTVSANE 71

Query: 70 YMNYLTIAAYRG 81
          YM YLT+ AY+ 
Sbjct: 72 YMTYLTVEAYQA 83


>ref|NP_834118.1| hypothetical protein [Bacillus cereus ATCC 14579]
 ref|NP_980790.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP11319.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAS43398.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 94

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 14 EIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRN----YDKEGRPALHKLVNDIYSLKANS 69
          +++ +  SK EEF++ GY+ VT  DIW           D + R  L++LVND+ ++ AN 
Sbjct: 14 QLQVVLESKVEEFQMFGYDRVTDDDIWKFLKVKKWKKIDSDVR--LYELVNDVLTVTANE 71

Query: 70 YMNYLTIAAYRG 81
          YM YLT+ AY+ 
Sbjct: 72 YMTYLTVEAYQA 83


>ref|NP_692949.1| hypothetical protein OB2028 [Oceanobacillus iheyensis HTE831]
 dbj|BAC13984.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 114

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 20 RSKAEEFRLLGYEYVTGKDIWDCASRNYDKEGRP--ALHKLVNDIYSLKANSYMNYLTIA 77
          +SKAEE  +LGY   T  D+W C      K G P   L+++V DI+ L +N Y++YLT++
Sbjct: 33 QSKAEELEMLGYSQATSDDVWRCLKEKVWK-GDPEKQLYEVVQDIFHLGSNIYLSYLTMS 91

Query: 78 AYR 80
          +Y+
Sbjct: 92 SYQ 94


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 127,118,759
Number of extensions: 4381976
Number of successful extensions: 10133
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10134
Number of HSP's successfully gapped: 3
Length of query: 84
Length of database: 757,237,578
Length adjustment: 53
Effective length of query: 31
Effective length of database: 613,337,331
Effective search space: 19013457261
Effective search space used: 19013457261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)