BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0016.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242107.1| adenine phosphoribosyltransferase [Bacillus hal... 221 4e-57 ref|NP_562855.1| adenine phosphoribosyltransferase [Clostridium ... 221 7e-57 ref|NP_815395.1| adenine phosphoribosyltransferase [Enterococcus... 211 5e-54 ref|NP_390639.1| adenine phosphoribosyltransferase [Bacillus sub... 211 6e-54 ref|NP_785602.1| adenine phosphoribosyltransferase [Lactobacillu... 209 1e-53 >ref|NP_242107.1| adenine phosphoribosyltransferase [Bacillus halodurans] sp|Q9KDH2|APT_BACHD Adenine phosphoribosyltransferase (APRT) pir||A83805 adenine phosphoribosyltransferase apt [imported] - Bacillus halodurans (strain C-125) dbj|BAB04960.1| adenine phosphoribosyltransferase [Bacillus halodurans] Length = 171 Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 105/171 (61%), Positives = 132/171 (77%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MDFK +I ++ +FP+ GI FKDITTL+++GE Y+RAIDE+ ++D++ GPEARGF Sbjct: 1 MDFKQHITIVENFPKEGIRFKDITTLMQNGEVYKRAIDEMARFAKEKEVDLVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 VVG P+AYA+G GFVP+RK+GKLP + I V Y LEYGKD L IH DA++ GQ VLIADDL Sbjct: 61 VVGCPIAYAIGKGFVPVRKAGKLPREVISVDYGLEYGKDRLTIHRDAIQKGQRVLIADDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTYE 171 LATGGTI +V +V+QLGG VVG AF+IEL L GR+KL +V SL TYE Sbjct: 121 LATGGTIEATVQMVEQLGGEVVGIAFMIELGYLNGRDKLVTYDVFSLTTYE 171 >ref|NP_562855.1| adenine phosphoribosyltransferase [Clostridium perfringens] sp|Q8XJ22|APT_CLOPE Adenine phosphoribosyltransferase (APRT) dbj|BAB81645.1| adenine phosphoribosyltransferase [Clostridium perfringens str. 13] Length = 172 Score = 221 bits (562), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 108/171 (63%), Positives = 126/171 (73%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 M KD IRVI DFP+ GISFKDITTL+ DGE R ++D++ IDV+ GPEARGF Sbjct: 1 MSLKDKIRVIEDFPKKGISFKDITTLIADGEGLRDSVDQMAEFFKDKNIDVVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 + G P+AYALGVGF+P+RK GKLP DT+ V YDLEYGKD L IH DA+KPG V I DDL Sbjct: 61 IFGVPVAYALGVGFIPVRKPGKLPGDTVRVEYDLEYGKDALEIHKDAIKPGMRVAIVDDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTYE 171 LATGGTIA LV+Q GG V G AF IELT+L GR+KL G EV SL+ Y+ Sbjct: 121 LATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRDKLKGYEVTSLVDYD 171 >ref|NP_815395.1| adenine phosphoribosyltransferase [Enterococcus faecalis V583] sp|Q834G6|APT_ENTFA Adenine phosphoribosyltransferase (APRT) gb|AAO81465.1| adenine phosphoribosyltransferase [Enterococcus faecalis V583] Length = 170 Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 99/170 (58%), Positives = 127/170 (74%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MD +D I IPD+P+ GI F+DI+ L+ +G+AYR A ++ +ID++ GPEARGF Sbjct: 1 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 +VG P+AY LGVGF P+RK GKLP +TIEV YDLEYG DTL +H DA+ PGQ VLI DDL Sbjct: 61 IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTI ++ LV+QLGG VVG AFLIEL L GR+K+ G ++ +L+ Y Sbjct: 121 LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY 170 >ref|NP_390639.1| adenine phosphoribosyltransferase [Bacillus subtilis] sp|O34443|APT_BACSU Adenine phosphoribosyltransferase (APRT) pir||B69587 adenine phosphoribosyltransferase (EC 2.4.2.7) - Bacillus subtilis gb|AAC46040.1| adenine phosphoribosyltransferase; Apt [Bacillus subtilis] emb|CAB14720.1| adenine phosphoribosyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 170 Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 98/170 (57%), Positives = 126/170 (74%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MD K + ++PD+P+ G+ FKDITTL+ G+ YR A D++ QID++ GPEARGF Sbjct: 1 MDLKQYVTIVPDYPKEGVQFKDITTLMDKGDVYRYATDQIVEYAKEKQIDLVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 ++G P+AYALGVGF P+RK GKLP + I+V Y LEYGKD L IH DA+KPGQ VLI DDL Sbjct: 61 IIGCPVAYALGVGFAPVRKEGKLPREVIKVDYGLEYGKDVLTIHKDAIKPGQRVLITDDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTI ++ LV++LGG V G AFLIEL+ L GRNKL ++ +L+ Y Sbjct: 121 LATGGTIEATIKLVEELGGVVAGIAFLIELSYLDGRNKLEDYDILTLMKY 170 >ref|NP_785602.1| adenine phosphoribosyltransferase [Lactobacillus plantarum WCFS1] sp|Q88VH0|APT_LACPL Adenine phosphoribosyltransferase (APRT) emb|CAD64452.1| adenine phosphoribosyltransferase [Lactobacillus plantarum WCFS1] Length = 172 Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 94/170 (55%), Positives = 128/170 (75%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 +D K + IPD+P+PGI F+DI+ L+ DGEAYR A D++ +D+I GPEARGF Sbjct: 3 LDLKKYVASIPDYPEPGIIFRDISPLMADGEAYREATDQIVQFARDKHVDMIVGPEARGF 62 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 +VG P+AY LGVGF P RK GKLP +T++ YDLEYG+ L +H DA+KPGQNVL+ DDL Sbjct: 63 IVGCPVAYELGVGFAPARKKGKLPRETVKATYDLEYGQSALYLHKDAIKPGQNVLVTDDL 122 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTI+ ++ +V++LGGNVVG AFL+EL +L GR+K+ ++ SL+ + Sbjct: 123 LATGGTISATIQMVEELGGNVVGTAFLVELKELHGRDKIKDYDMLSLMQF 172 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.141 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 261,272,526 Number of extensions: 10504934 Number of successful extensions: 29846 Number of sequences better than 1.0e-05: 650 Number of HSP's gapped: 29716 Number of HSP's successfully gapped: 651 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)