BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0002.p
         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_923092.1| putative transposase [Gloeobacter violaceus] >g...    91   1e-17
dbj|BAA89624.1| similar to transposase of Tn5 [bacteriophage WO]       72   4e-12
ref|NP_942668.1| putative transposase [Ralstonia eutropha] >gi|3...    67   2e-10
gb|EAC36267.1| unknown [environmental sequence]                        64   2e-09
ref|ZP_00090237.1| hypothetical protein [Azotobacter vinelandii]       62   5e-09

>ref|NP_923092.1| putative transposase [Gloeobacter violaceus]
 ref|NP_923317.1| putative transposase [Gloeobacter violaceus]
 dbj|BAC88087.1| glr0146 [Gloeobacter violaceus PCC 7421]
 dbj|BAC88312.1| gll0371 [Gloeobacter violaceus PCC 7421]
          Length = 467

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 62/94 (65%)

Query: 2   FYSIIALQIQHLTYRSREQPEAPATEVIREDEWQVLYRIAYRTKTVPQQPATLKEVVFAL 61
            Y I+A ++  LTY+SR +PE P T  + + EWQ LY    +++ +P++  +L++ V  +
Sbjct: 356 VYCIVAWRLLQLTYQSRSEPELPCTVALAQHEWQALYCRMTQSRQLPEEAPSLRQAVRWI 415

Query: 62  AKLGGFLGRKSDGDPGAKVIWRGLRRFRDVYESY 95
           A+LGGF+GRK DG+PG K +WRG +R  D+   +
Sbjct: 416 AQLGGFVGRKGDGEPGVKTLWRGWQRLEDLAAGW 449


>dbj|BAA89624.1| similar to transposase of Tn5 [bacteriophage WO]
          Length = 470

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 4   SIIALQIQHLTYRSREQPEAPATEVIREDEWQVLYRIAYRTKTVPQQPATLKEVVFALAK 63
           SIIA +I  +T  +R  P  P T ++ E+EW+VLY   +R       P T+KE V  +A+
Sbjct: 370 SIIAWRIFFITTIARIDPTLPCTTLLAEEEWKVLYVKIHRKPCSNATP-TIKEAVSWIAQ 428

Query: 64  LGGFLGRKSDGDPGAKVIWRGLRRFRDVYESY 95
           LGG L RK+D +PG   IW+G RR  D+ E +
Sbjct: 429 LGGHLARKNDLEPGPITIWKGWRRLFDLAEGW 460


>ref|NP_942668.1| putative transposase [Ralstonia eutropha]
 gb|AAP85782.1| putative transposase [Ralstonia eutropha]
          Length = 109

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 2   FYSIIALQIQHLTYRSREQPEAPATEVIREDEWQVLYRIAYRTKTVPQQPATLKEVVFAL 61
            + ++A +I  L    R  P+  A  +   DEW+  +      K  P+    L EVV  +
Sbjct: 10  LFMVVAWRIARLMRLGRTCPDLDAGLLFERDEWRAAF--ILNKKKPPKTSPRLNEVVRLV 67

Query: 62  AKLGGFLGRKSDGDPGAKVIWRGLRRFRDVYESYHY 97
           A LGGFL RK DG+PG K IW+GL+R  D      Y
Sbjct: 68  AMLGGFLARKGDGEPGVKTIWQGLQRVVDFAAGLRY 103


>gb|EAC36267.1| unknown [environmental sequence]
          Length = 283

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 2   FYSIIALQIQHLTYRSREQPEAPATEVIREDEWQVLYRIAYRTKTVPQQPATLKEVVFAL 61
            Y IIA +I +LT  SR  PE     V    EWQ +Y +  +   +P+ P +  +++  +
Sbjct: 179 LYMIIAWRILYLTMLSRSHPEVSCDAVFEVCEWQSVY-VVVKKGVLPKTPPSSGDMINMV 237

Query: 62  AKLGGFLGRKSDGDPGAKVIWRGLRRFRD 90
           A+LGG++ +K + +PG K IW G +R  D
Sbjct: 238 AQLGGYI-KKPNSNPGVKTIWLGFQRMHD 265


>ref|ZP_00090237.1| hypothetical protein [Azotobacter vinelandii]
          Length = 240

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 2   FYSIIALQIQHLTYRSREQPEAPATEVIREDEWQVLYRIAYRTKTVPQQPATLKEVVFAL 61
            Y ++A ++ +     R  PE     +    EW+  Y +  R   +P  P  L E+V  +
Sbjct: 137 LYLVVAWRVLYSLMLGRACPELNCELIFEAREWRAAYLVIKRCPPLPVPP-RLGEMVEWV 195

Query: 62  AKLGGFLGRKSDGDPGAKVIWRGLRRFRD 90
           A LGG+LGRK DG PG K +W GL+R R+
Sbjct: 196 AGLGGYLGRKHDGPPGPKAMWIGLQRLRE 224


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 152,009,899
Number of extensions: 5278079
Number of successful extensions: 9395
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9390
Number of HSP's successfully gapped: 11
Length of query: 99
Length of database: 757,237,578
Length adjustment: 66
Effective length of query: 33
Effective length of database: 578,041,044
Effective search space: 19075354452
Effective search space used: 19075354452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)