BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0064.p
         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_833955.1| hypothetical protein [Bacillus cereus ATCC 1457...    59   2e-08
ref|NP_390358.1| yqgY [Bacillus subtilis] >gi|1731032|sp|P54502|...    59   3e-08
ref|NP_980616.1| conserved hypothetical protein [Bacillus cereus...    59   3e-08
ref|NP_846694.1| conserved hypothetical protein [Bacillus anthra...    59   3e-08
ref|ZP_00182010.1| hypothetical protein Exigu271801 [Exiguobacte...    54   1e-06

>ref|NP_833955.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP11156.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 80

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 45/65 (69%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD++  ALLF  QT FFV+L Y+K TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFSVMFYVGDMQPAALLFLGQTGFFVLLSYLKLTERMYIYVFGAYLTVFFIGFT 67

Query: 61 YWTIF 65
          Y+T F
Sbjct: 68 YYTTF 72


>ref|NP_390358.1| yqgY [Bacillus subtilis]
 sp|P54502|YQGY_BACSU Hypothetical protein yqgY
 pir||B69958 hypothetical protein yqgY - Bacillus subtilis
 dbj|BAA12528.1| YqgY [Bacillus subtilis]
 emb|CAB14409.1| yqgY [Bacillus subtilis subsp. subtilis str. 168]
          Length = 81

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD+K+ +LLFF QT  FV L Y+  TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFAVMFYLGDMKDASLLFFGQTILFVFLSYLNLTERMYIYIFGAYLTIFFAGFT 67

Query: 61 YWTIFEM 67
          Y++IF M
Sbjct: 68 YYSIFIM 74


>ref|NP_980616.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43224.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 80

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD+   ALLF  QT FFV+L Y+K TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFSVMFYVGDMHSTALLFLGQTGFFVLLSYLKLTERMYIYVFGAYLTVFFIGFT 67

Query: 61 YWTIF 65
          Y+T F
Sbjct: 68 YYTTF 72


>ref|NP_846694.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28180.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 80

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD+   ALLF  QT FFV+L Y+K TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFSVMFYVGDMDSTALLFLGQTGFFVLLSYLKLTERMYIYVFGAYLTVFFIGFT 67

Query: 61 YWTIF 65
          Y+T F
Sbjct: 68 YYTTF 72


>ref|ZP_00182010.1| hypothetical protein Exigu271801 [Exiguobacterium sp. 255-15]
          Length = 84

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 13/80 (16%)

Query: 1  LGFFTLVIGLMAF----AGDLKE---------MALLFFLQTAFFVILGYMKFTEKTYILL 47
          LGF+T +I +MAF     GD            M  +F  QT FF  LGY++ TEKTY+ +
Sbjct: 5  LGFWTGIIAVMAFIGALGGDASSSEHTDSFLVMGFVFLAQTVFFAALGYLRLTEKTYVYI 64

Query: 48 FWGYMILTFTGFSYWTIFEM 67
          F  Y+ + F  F+YW+ F+M
Sbjct: 65 FAAYLTVFFIVFTYWSNFQM 84


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.340    0.153    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,794,308
Number of extensions: 3179882
Number of successful extensions: 19809
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 19808
Number of HSP's successfully gapped: 7
Length of query: 71
Length of database: 757,237,578
Length adjustment: 42
Effective length of query: 29
Effective length of database: 643,203,420
Effective search space: 18652899180
Effective search space used: 18652899180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 120 (50.8 bits)