BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0060.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA39788.1| OppB [Bacillus subtilis] 308 1e-82 ref|NP_389026.1| oligopeptide ABC transporter (permease) [Bacill... 306 3e-82 gb|AAA62688.1| sporulation protein 278 2e-73 ref|NP_622278.1| ABC-type dipeptide/oligopeptide/nickel transpor... 277 2e-73 gb|AAA62689.1| sporulation protein 268 9e-71 >emb|CAA39788.1| OppB [Bacillus subtilis] Length = 311 Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 152/310 (49%), Positives = 206/310 (66%) Query: 20 MVRYVANKFFYMLVSLFVLVSATFFLMKAIPGDPFTSEKKVPPEIKARLYEQYGLDKPLY 79 M++Y+ + YM+++LFV+V+ TFFLM+A PG PF+ EKK+PPEI+A L YGLDKPL+ Sbjct: 1 MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLF 60 Query: 80 HQYFKYLGEIAQGDLGVSMKRLNQDVTHLIGQTFSASLKLXXXXXXXXXXXXXXXXMLAA 139 QY YL +A D G S K Q V LI F S L ++AA Sbjct: 61 VQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLFGVIAA 120 Query: 140 LYHRKFIDSAAMVLAVLGIAVPSFVVASLLQYVFAYKLHLFPVSGFKGPMYYFLPVAALS 199 LYH K+ D +L + GI+VPSF++A++LQYVF+ KL LFPV+G+ Y FLP AL+ Sbjct: 121 LYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA 180 Query: 200 AQPIAFIARLTRSSMLEVLHADYIKTAKAKGLSWFTILSRHVLRNGILPIVTYMGPMTAN 259 + P+AFIARL+RSSM+EVL++DYI+TAKAKGLS + RH +RN +LP+VTYMGPM A Sbjct: 181 SMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPALTVRHAIRNALLPVVTYMGPMAAQ 240 Query: 260 IVTGSVVXXXXXXXXXXXKQFVEAIGVRDYTVIMGITIFYGILLMVARFITDIAYVLIDP 319 ++TGS + FV +I RDYTVIMG+T+F+ ++L++ I D+ Y +IDP Sbjct: 241 VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDP 300 Query: 320 RIKLSGGKEG 329 RIKLS K+G Sbjct: 301 RIKLSKAKKG 310 >ref|NP_389026.1| oligopeptide ABC transporter (permease) [Bacillus subtilis] sp|P24138|OPPB_BACSU Oligopeptide transport system permease protein oppB pir||H69668 oligopeptide transport system permease protein oppB - Bacillus subtilis emb|CAB13001.1| oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. subtilis str. 168] Length = 311 Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/310 (49%), Positives = 206/310 (66%) Query: 20 MVRYVANKFFYMLVSLFVLVSATFFLMKAIPGDPFTSEKKVPPEIKARLYEQYGLDKPLY 79 M++Y+ + YM+++LFV+V+ TFFLM+A PG PF+ EKK+PPEI+A L YGLDKPL+ Sbjct: 1 MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLF 60 Query: 80 HQYFKYLGEIAQGDLGVSMKRLNQDVTHLIGQTFSASLKLXXXXXXXXXXXXXXXXMLAA 139 QY YL +A D G S K Q V LI F S L ++AA Sbjct: 61 VQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAA 120 Query: 140 LYHRKFIDSAAMVLAVLGIAVPSFVVASLLQYVFAYKLHLFPVSGFKGPMYYFLPVAALS 199 LYH K+ D +L + GI+VPSF++A++LQYVF+ KL LFPV+G+ Y FLP AL+ Sbjct: 121 LYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA 180 Query: 200 AQPIAFIARLTRSSMLEVLHADYIKTAKAKGLSWFTILSRHVLRNGILPIVTYMGPMTAN 259 + P+AFIARL+RSSM+EVL++DYI+TAKAKGLS + RH +RN +LP+VTYMGPM A Sbjct: 181 SMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ 240 Query: 260 IVTGSVVXXXXXXXXXXXKQFVEAIGVRDYTVIMGITIFYGILLMVARFITDIAYVLIDP 319 ++TGS + FV +I RDYTVIMG+T+F+ ++L++ I D+ Y +IDP Sbjct: 241 VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDP 300 Query: 320 RIKLSGGKEG 329 RIKLS K+G Sbjct: 301 RIKLSKAKKG 310 >gb|AAA62688.1| sporulation protein Length = 311 Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 196/310 (63%) Query: 20 MVRYVANKFFYMLVSLFVLVSATFFLMKAIPGDPFTSEKKVPPEIKARLYEQYGLDKPLY 79 M++Y+ + YM+++LFV+V+ TFFLM+A PG PF+ EKK+PPEI+A L YGLDKPL+ Sbjct: 1 MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLF 60 Query: 80 HQYFKYLGEIAQGDLGVSMKRLNQDVTHLIGQTFSASLKLXXXXXXXXXXXXXXXXMLAA 139 QY YL +A D G S K Q V LI F S L ++AA Sbjct: 61 VQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAA 120 Query: 140 LYHRKFIDSAAMVLAVLGIAVPSFVVASLLQYVFAYKLHLFPVSGFKGPMYYFLPVAALS 199 LYH K+ D +L + GI+VPSF++A++LQYVF+ KL LFPV+G+ Y FLP AL+ Sbjct: 121 LYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA 180 Query: 200 AQPIAFIARLTRSSMLEVLHADYIKTAKAKGLSWFTILSRHVLRNGILPIVTYMGPMTAN 259 + P+AFIARL+RSSM+EVL++DYI+TAKAKGLS + ++ +GPM A Sbjct: 181 SMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILGPMAAQ 240 Query: 260 IVTGSVVXXXXXXXXXXXKQFVEAIGVRDYTVIMGITIFYGILLMVARFITDIAYVLIDP 319 ++TGS + FV +I RDYTVIMG+T+F+ ++L++ I D+ Y +IDP Sbjct: 241 VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDP 300 Query: 320 RIKLSGGKEG 329 RIKLS K+G Sbjct: 301 RIKLSKAKKG 310 >ref|NP_622278.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Thermoanaerobacter tengcongensis] gb|AAM23882.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Thermoanaerobacter tengcongensis] Length = 309 Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/309 (47%), Positives = 202/309 (65%), Gaps = 1/309 (0%) Query: 20 MVRYVANKFFYMLVSLFVLVSATFFLMKAIPGDPFTSEKKVPPEIKARLYEQYGLDKPLY 79 M+RY + YM+++L+V+V+ TFFLM IPGDPFTSEKKVP +I+ + +Y LDKPL Sbjct: 1 MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLI 60 Query: 80 HQYFKYLGEIAQGDLGVSMKRLNQDVTHLIGQTFSASLKLXXXXXXXXXXXXXXXXMLAA 139 QY YL + GDLG+S+K LN+ V +I F AS ++ ++AA Sbjct: 61 VQYGYYLRNLLHGDLGISLKYLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAA 120 Query: 140 LYHRKFIDSAAMVLAVLGIAVPSFVVASLLQYVFAYKLHLFPVSGFKGPMYYFLPVAALS 199 L F D +M+LAV+G +VP+F++A+LLQY A K LFPVSG+ + LP ALS Sbjct: 121 LNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKLFPVSGWGTFAHTVLPSIALS 180 Query: 200 AQPIAFIARLTRSSMLEVLHADYIKTAKAKGLSWFTILSRHVLRNGILPIVTYMGPMTAN 259 +A I+RL R+SML+V+ DYIKTAKAKGLS F I+ RH++RN +LP++T +GP+TA Sbjct: 181 FASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG 240 Query: 260 IVTGSVVXXXXXXXXXXXKQFVEAIGVRDYTVIMGITIFYGILLMVARFITDIAYVLIDP 319 IVTG+ V K +V++I DYT+I+G TIFY +L+ F+ DI Y L+DP Sbjct: 241 IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDP 300 Query: 320 RIKLS-GGK 327 RI+L+ GGK Sbjct: 301 RIRLAKGGK 309 >gb|AAA62689.1| sporulation protein Length = 300 Score = 268 bits (686), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 189/299 (63%) Query: 31 MLVSLFVLVSATFFLMKAIPGDPFTSEKKVPPEIKARLYEQYGLDKPLYHQYFKYLGEIA 90 M+++LFV+V+ TFFLM+A PG PF+ EKK+PPEI+A L YGLDKPL+ QY YL +A Sbjct: 1 MIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVA 60 Query: 91 QGDLGVSMKRLNQDVTHLIGQTFSASLKLXXXXXXXXXXXXXXXXMLAALYHRKFIDSAA 150 D G S K Q V LI F S L ++AALYH K+ D Sbjct: 61 MWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTV 120 Query: 151 MVLAVLGIAVPSFVVASLLQYVFAYKLHLFPVSGFKGPMYYFLPVAALSAQPIAFIARLT 210 +L + GI+VPSF++A++LQYVF+ KL LFPV+G+ Y FLP AL++ P+AFIARL+ Sbjct: 121 AILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALASMPMAFIARLS 180 Query: 211 RSSMLEVLHADYIKTAKAKGLSWFTILSRHVLRNGILPIVTYMGPMTANIVTGSVVXXXX 270 RSSM+EVL++DYI+TAKAKGLS + ++ +GPM A ++TGS + Sbjct: 181 RSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILGPMAAQVLTGSFIIETI 240 Query: 271 XXXXXXXKQFVEAIGVRDYTVIMGITIFYGILLMVARFITDIAYVLIDPRIKLSGGKEG 329 FV +I RDYTVIMG+T+F+ ++L++ I D+ Y +IDPRIKLS K+G Sbjct: 241 FGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKG 299 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 407,473,102 Number of extensions: 14520873 Number of successful extensions: 55859 Number of sequences better than 1.0e-05: 1387 Number of HSP's gapped: 53343 Number of HSP's successfully gapped: 1424 Length of query: 329 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 203 Effective length of database: 415,135,104 Effective search space: 84272426112 Effective search space used: 84272426112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)