BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0057.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_350211.1| Oligopeptide ABC transporter, ATPase component ... 400 e-110 ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transpor... 384 e-105 ref|ZP_00061867.1| COG4608: ABC-type oligopeptide transport syst... 384 e-105 ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] 382 e-105 ref|NP_814650.1| peptide ABC transporter, ATP-binding protein [E... 382 e-105 >ref|NP_350211.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] pir||D97345 oligopeptide ABC transporter, ATPase component CAC3628 [imported] - Clostridium acetobutylicum gb|AAK81551.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 322 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/313 (62%), Positives = 237/313 (75%), Gaps = 13/313 (4%) Query: 2 SKNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYE 61 S LIEV+ LKKYFNVG +LKAVD+++FTI++GETLG+VGESGCGKTT GRTVL LY+ Sbjct: 7 SDVLIEVKNLKKYFNVGHNAILKAVDDVSFTIKKGETLGLVGESGCGKTTCGRTVLGLYQ 66 Query: 62 PTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAG 121 T G V Y+G +I+ L K + QMIFQDPYA LNPR TV DII E +D+HG+ Sbjct: 67 ATEGEVNYDGVNIHSLRGKAKKEFSKKAQMIFQDPYACLNPRMTVGDIIAEGIDVHGLYK 126 Query: 122 SRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISAL 181 ER K+I E+LD VGLN +HA+R+PHEFSGGQRQRIGIAR+LA+NP+FIVCDEPISAL Sbjct: 127 GE-ERTKKIYEMLDHVGLNREHASRFPHEFSGGQRQRIGIARALAINPEFIVCDEPISAL 185 Query: 182 DVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYAN 241 DVSIQAQ+VNLL +LQ +GLTYLFIAHDLSMVKHISDRV VMYLG MVE A S +LY N Sbjct: 186 DVSIQAQIVNLLIKLQREMGLTYLFIAHDLSMVKHISDRVGVMYLGTMVEFAASHDLYEN 245 Query: 242 PIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI-------YAAGEKTNDSDY---- 290 P+HPYTK+L+SAIP+PDP+VE ++RI L E+ SPI +A K D Sbjct: 246 PLHPYTKALMSAIPIPDPKVEKTRQRIKLEGEVPSPINPKPGCRFAGRCKQAKPDCFEKK 305 Query: 291 -QLVEVSKGHFVA 302 + E+ KGHFV+ Sbjct: 306 PEFKEIEKGHFVS 318 >ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23885.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 320 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/313 (61%), Positives = 239/313 (76%), Gaps = 14/313 (4%) Query: 2 SKNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYE 61 SK L+EV+ LKKYF V KG VLKAVD+++F I++GETLG+VGESGCGK+T GRT++ LYE Sbjct: 4 SKVLLEVKNLKKYFYV-KGGVLKAVDDVSFAIKKGETLGLVGESGCGKSTTGRTIIGLYE 62 Query: 62 PTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAG 121 PTAG + ++G + LS K R +QMIFQDPYASLNPR TV DIIGE +DIHG+ Sbjct: 63 PTAGEIVFDGEKVDHLSYEGRKKFARRVQMIFQDPYASLNPRMTVGDIIGEGIDIHGLYT 122 Query: 122 SRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISAL 181 + ER +RI ELL+MVGLN +HA R+PHEFSGGQRQRIGIAR++A+ P+FI+ DEPISAL Sbjct: 123 GK-ERMERIYELLEMVGLNREHANRFPHEFSGGQRQRIGIARAMAIEPEFIIADEPISAL 181 Query: 182 DVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYAN 241 DVSIQAQ+VNLL LQ+ GLTYLFIAHDLSMV+HISD VAVMYLG +VE+ S ELYAN Sbjct: 182 DVSIQAQIVNLLMNLQEEKGLTYLFIAHDLSMVRHISDNVAVMYLGTIVEMTSSAELYAN 241 Query: 242 PIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYA------------AGEKTNDSD 289 P+HPYT++LLSA+P+PDP+V+ ++RI L ++ SPI A + + Sbjct: 242 PLHPYTQALLSAVPIPDPKVQKKRERIILEGDVPSPINPPSGCKFRTRCKYAMDICKEQA 301 Query: 290 YQLVEVSKGHFVA 302 L EV+ GHFVA Sbjct: 302 PPLKEVASGHFVA 314 >ref|ZP_00061867.1| COG4608: ABC-type oligopeptide transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 342 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 179/278 (64%), Positives = 226/278 (81%), Gaps = 4/278 (1%) Query: 5 LIEVEGLKKYFNV----GKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLY 60 LIEV+ LK+YFN+ GK +KAVD++ F I +GETLG+VGESG GKTT GRT+LR+Y Sbjct: 22 LIEVKNLKQYFNIKTSLGKKATVKAVDDVTFEIYKGETLGLVGESGSGKTTLGRTILRIY 81 Query: 61 EPTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMA 120 EPTAG V + G DI KL G++ R+ MQ IFQDPYASL+PR TVSDI+GEALDIH + Sbjct: 82 EPTAGRVVFLGVDITKLGRGQLLPYRKKMQYIFQDPYASLDPRMTVSDIVGEALDIHRLV 141 Query: 121 GSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISA 180 S+ ER++++ ELL MVGLN +HA+RYPHEFSGGQRQRIGIAR++AV P+FIVCDEP+SA Sbjct: 142 SSKKEREEKVRELLKMVGLNTEHASRYPHEFSGGQRQRIGIARAIAVEPEFIVCDEPVSA 201 Query: 181 LDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYA 240 LDVSI+AQ++N L+E+Q+RL LTYLFI+HDL +V+H DRV VMYLG +VEL ESEELY Sbjct: 202 LDVSIRAQIINTLEEMQERLNLTYLFISHDLGVVRHTCDRVGVMYLGHIVELVESEELYK 261 Query: 241 NPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI 278 NP+HPYT++LL+AIP P+PE+ + RI L E+ SP+ Sbjct: 262 NPLHPYTQALLTAIPRPNPEIAKKRNRIILKGEIPSPV 299 >ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] Length = 371 Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/321 (58%), Positives = 238/321 (74%), Gaps = 20/321 (6%) Query: 5 LIEVEGLKKYFNVGKGKV-------LKAVDNINFTIREGETLGMVGESGCGKTTAGRTVL 57 LIE++ L+ YF V +G + +KAVD ++F+I+ GETLG+VGESGCGK+T GR +L Sbjct: 16 LIEIKDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAIL 75 Query: 58 RLYEPTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIH 117 +LY PT+G V + GTD+ KL ++ MRR +QMIFQDPYASLNPR TV DII E + +H Sbjct: 76 QLYRPTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRVH 135 Query: 118 GMAGSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEP 177 + RA R+ R+EELL +VGLN A RYPHEFSGGQRQRIGIAR+LAV P F+VCDEP Sbjct: 136 KLREGRAVRE-RVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEP 194 Query: 178 ISALDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEE 237 +SALDVSIQAQVVNLL+ELQD+LGLTYLFIAHDLS+V HISDRVAVMYLGK+VELAE + Sbjct: 195 VSALDVSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPK 254 Query: 238 LYANPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYA------------AGEKT 285 LY+ P+HPYT++LLSA+P+PDP+VE ++RI L ++ SP+ A +K Sbjct: 255 LYSMPLHPYTQALLSAVPIPDPKVEKQRRRIILEGDVPSPLNPPPGCHFHTRCPIAIQKC 314 Query: 286 NDSDYQLVEVSKGHFVAKQYA 306 + + V+ GHF A A Sbjct: 315 KEEEPPFVDYGNGHFAACWRA 335 >ref|NP_814650.1| peptide ABC transporter, ATP-binding protein [Enterococcus faecalis V583] gb|AAO80720.1| peptide ABC transporter, ATP-binding protein [Enterococcus faecalis V583] Length = 318 Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/300 (61%), Positives = 237/300 (79%), Gaps = 11/300 (3%) Query: 3 KNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEP 62 K L+EV GLK+YFNVG+ +KA+D+I+F I EGET G+VGESG GK+T GR+V+RLY+P Sbjct: 6 KVLLEVTGLKQYFNVGRKDEVKAIDDISFHIYEGETFGLVGESGSGKSTTGRSVIRLYDP 65 Query: 63 TAGSVKYNGTDIYKL-SAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAG 121 TAG + ++G DI K+ S M+A RRD+QMIFQDPYASLNPR V+DII E +D++G+A Sbjct: 66 TAGEILFDGKDISKIKSKADMQAFRRDVQMIFQDPYASLNPRMKVNDIIAEGIDVNGLAK 125 Query: 122 SRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISAL 181 + ER++++ ELL VGLN H+TRYPHEFSGGQRQRIGIAR+LAVNP+FI+CDEPISAL Sbjct: 126 TPKEREEKVNELLKTVGLNPSHSTRYPHEFSGGQRQRIGIARALAVNPRFIICDEPISAL 185 Query: 182 DVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYAN 241 DVSIQAQVVNLL++LQ GLTYLFIAHDLSMVKHISDR+ VM+ GK++E+ S+++Y Sbjct: 186 DVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSDDVYNF 245 Query: 242 PIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYAAGEKTNDSDYQLVEVSKGHFV 301 +HPYT+SLLSAIP+PDP+ E +KRI + P A G+ D +L E+ GH+V Sbjct: 246 GVHPYTESLLSAIPLPDPDYERTRKRI-----VYQPAAADGK-----DRELREILNGHYV 295 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 441,918,302 Number of extensions: 18212295 Number of successful extensions: 119767 Number of sequences better than 1.0e-05: 20254 Number of HSP's gapped: 97840 Number of HSP's successfully gapped: 21671 Length of query: 306 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 181 Effective length of database: 417,850,203 Effective search space: 75630886743 Effective search space used: 75630886743 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)