BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0040.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN04559.1| FtsQ [Bacillus mycoides] 90 5e-17 ref|NP_833628.1| Cell division protein ftsQ [Bacillus cereus ATC... 89 1e-16 gb|AAN04555.1| FtsQ [Bacillus mycoides] 88 2e-16 ref|NP_846287.1| cell division protein FtsQ [Bacillus anthracis ... 88 2e-16 ref|NP_980249.1| cell division protein FtsQ [Bacillus cereus ATC... 88 2e-16 >gb|AAN04559.1| FtsQ [Bacillus mycoides] Length = 256 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 4/188 (2%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T +++ +SG+ +F V+ E++L K K I+E V K Sbjct: 49 RSPLSNIKKISVFGNHYMTDEQVMKESGVTYDTSYFRVTAHKAEENLTKRKEIKEVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + + I+EY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNKIDVHIEEYLTIGY-INKDGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEEK-- 165 Query: 159 KAKLCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQ 218 +L L + + ISEI +PT + D + LY +EV T I ++E Sbjct: 166 MKELIAELEKLTPTILRSISEIRYTPTNANEDHLTLYMNEGYEVSTTIQNFAKRMEAYPL 225 Query: 219 VIETEEPG 226 +++T EPG Sbjct: 226 ILKTIEPG 233 >ref|NP_833628.1| Cell division protein ftsQ [Bacillus cereus ATCC 14579] gb|AAP10829.1| Cell division protein ftsQ [Bacillus cereus ATCC 14579] Length = 256 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 4/188 (2%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T +++ SG+ +F V+ E++L K K I+ V K Sbjct: 49 RSPLSNIKKISVFGNHYMTDEQVMKDSGVTYDTSYFRVTAHKAEENLTKRKEIKAVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + I I+EY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNNIDIHIEEYLTIGY-INKEGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEEK-- 165 Query: 159 KAKLCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQ 218 +L L + + ISEI SPT + D + LY +EV T I ++E Sbjct: 166 MKELIAELEKLTPAILKSISEIRYSPTNANEDHLTLYMNEGYEVSTTIQNFAKRMEAYPL 225 Query: 219 VIETEEPG 226 +++T EPG Sbjct: 226 ILKTIEPG 233 >gb|AAN04555.1| FtsQ [Bacillus mycoides] Length = 256 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 4/188 (2%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T +++ +SG+ +F V+ E++L K K I+ V K Sbjct: 49 RSPLSNIKKISVFGNHYMTDEQVMKESGVTYDTSYFRVTAHKAEENLTKRKEIKAVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + + I+EY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNKIDVHIEEYLTIGY-INKDGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEEK-- 165 Query: 159 KAKLCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQ 218 +L L + + ISEI +PT + D + LY +EV T I ++E Sbjct: 166 MKELIAELEKLTPTILRSISEIRYTPTNANEDHLTLYMNEGYEVSTTIQNFAKRMEAYPL 225 Query: 219 VIETEEPG 226 +I+T EPG Sbjct: 226 IIKTIEPG 233 >ref|NP_846287.1| cell division protein FtsQ [Bacillus anthracis str. Ames] gb|AAP27773.1| cell division protein FtsQ [Bacillus anthracis str. Ames] Length = 265 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 4/188 (2%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T +++ +SG+ +F V+ E++L K K I+ V K Sbjct: 49 RSPLSNIKKISVFGNHYMTDEQVMKESGVTYDTSYFRVTAHKAEENLTKRKEIKAVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + + I+EY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNKIDVHIEEYLTIGY-INKDGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEEK-- 165 Query: 159 KAKLCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQ 218 +L L + + ISEI SPT + D + LY +EV T I ++E Sbjct: 166 MKELIAELEKLTPTILRSISEIRYSPTNANEDHLTLYMNEGYEVSTTIQNFAKRMETYPL 225 Query: 219 VIETEEPG 226 +++T EPG Sbjct: 226 ILKTIEPG 233 >ref|NP_980249.1| cell division protein FtsQ [Bacillus cereus ATCC 10987] gb|AAS42857.1| cell division protein FtsQ [Bacillus cereus ATCC 10987] Length = 256 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 4/188 (2%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T +++ +SG+ +F V+ E++L K K I+ V K Sbjct: 49 RSPLSNIKKISVFGNHYMTDEQVMKESGVTYDTSYFRVTAHKAEENLTKRKEIKAVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + + I+EY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNKIDVHIEEYLTIGY-INKDGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEEK-- 165 Query: 159 KAKLCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQ 218 +L L + + ISEI SPT + D + LY +EV T I ++E Sbjct: 166 MKELIAELEKLTPTILRSISEIRYSPTNANEDHLTLYMNEGYEVSTTIQNFAKRMEAYPL 225 Query: 219 VIETEEPG 226 +++T EPG Sbjct: 226 ILKTIEPG 233 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 298,825,481 Number of extensions: 10794928 Number of successful extensions: 23374 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 23364 Number of HSP's successfully gapped: 21 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 124 (52.4 bits)