BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0036.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00100286.1| COG0642: Signal transduction histidine kinase... 196 8e-49 ref|ZP_00099465.1| hypothetical protein [Desulfitobacterium hafn... 187 2e-46 ref|NP_658854.1| hypothetical protein predicted by GeneMark [Bac... 186 5e-46 ref|NP_847267.1| conserved hypothetical protein [Bacillus anthra... 184 2e-45 emb|CAD30163.1| conserved hypothetical protein [Bacillus thuring... 179 9e-44 >ref|ZP_00100286.1| COG0642: Signal transduction histidine kinase [Desulfitobacterium hafniense] Length = 308 Score = 196 bits (497), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 112/270 (41%), Positives = 162/270 (60%), Gaps = 13/270 (4%) Query: 2 NIMELLDPRVDFVFKRIFASENNKDVLLAFLNHIFMDAGDAPLDEVILLNPYTDKDDPQD 61 ++ E + ++D+ FK IF E N+ +L+AFLN + ++ + ++NP +K+ D Sbjct: 7 SMKEFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLPQERRIEAITIMNPELNKEYQGD 66 Query: 62 KLSIFDIWAKTVEGKLINIEMQLFNKYDMEKRTLYYWSKRYSGQLQTGGRYTELKKCVTI 121 K SI D+ A+T EG INIE+QL N+YDMEKR+LYYW++ YS Q++ G Y EL K VTI Sbjct: 67 KKSILDVRAETSEGMQINIEIQLSNQYDMEKRSLYYWAEMYSRQIREGMAYKELAKAVTI 126 Query: 122 NILNYKVLP-NEHTHSVFHLREDISGAPLTDDIEIHFLELPKL-----NQPAVPGEGGLI 175 NIL++ L + H+VFHL ED LTD +E+HF+ELPKL N+ P E L+ Sbjct: 127 NILDFNYLKQTSNYHNVFHLYEDEEKFQLTDALEMHFMELPKLLAKWRNREISPWENELV 186 Query: 176 NWLLFLKGSDN----SNWEVLRMNEPALRKAMETLEFLSQDSEARRKYEERQKALHDE-A 230 WLL L+G+DN E + M +P L +AM E S D R Y +R+KA+ DE A Sbjct: 187 RWLLLLEGADNQEILQTLEEIAMKDPVLHQAMTAWEETSDDPRIREAYFDRRKAVLDEKA 246 Query: 231 SQRDGAQREGFAKGMQEGLQAGMQAGMQEG 260 + R+ R + +++G AG+ AG EG Sbjct: 247 AIREAELR--LKEALEKGRAAGIAAGKAEG 274 >ref|ZP_00099465.1| hypothetical protein [Desulfitobacterium hafniense] Length = 295 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 1/249 (0%) Query: 12 DFVFKRIFASENNKDVLLAFLNHIFMDAGDAPLDEVILLNPYTDKDDPQDKLSIFDIWAK 71 D++FK IF + NKD+LL+FLN + AG+ L ++ L + D + +DK+S DI Sbjct: 12 DYLFKYIFGRQENKDILLSFLNAVLSPAGEDELTDITLSDRELDPEHLKDKMSRLDILGV 71 Query: 72 TVEGKLINIEMQLFNKYDMEKRTLYYWSKRYSGQLQTGGRYTELKKCVTINILNYKVLPN 131 +G LINIE+Q+ ++ +++KRTLYYW+K Y QLQ+G Y +L + VT+N+LN+ LP+ Sbjct: 72 ANDGSLINIEVQIASEKNIDKRTLYYWAKIYQSQLQSGMLYKDLARTVTVNVLNFSFLPD 131 Query: 132 -EHTHSVFHLREDISGAPLTDDIEIHFLELPKLNQPAVPGEGGLINWLLFLKGSDNSNWE 190 + HS+F L E SG L D+EIHFLEL K + L WL++L +D E Sbjct: 132 AQRYHSMFSLYEAHSGLRLNRDLEIHFLELEKWKALSTKPRTRLDKWLMYLSNTDPKELE 191 Query: 191 VLRMNEPALRKAMETLEFLSQDSEARRKYEERQKALHDEASQRDGAQREGFAKGMQEGLQ 250 + M+EPA+ KA+ E ++ + R YE R+K + D S D A+ EG +G+ +G+ Sbjct: 192 EIAMSEPAIGKALTVEEIFLKNDKERYLYEMREKGIRDHLSAMDNAKTEGIEQGLAQGIA 251 Query: 251 AGMQAGMQE 259 G++ G E Sbjct: 252 QGIERGKTE 260 >ref|NP_658854.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 331 Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 168/272 (61%), Gaps = 17/272 (6%) Query: 5 ELLDPRVDFVFKRIFASENNKDVLLAFLNHIFMDAGDAPLDEVILLNPYTDKDDPQDKLS 64 +L++ R+DF FK++F + ++D+L+AFLN + ++ ++P+ + L +P+ ++ DKLS Sbjct: 5 QLVNLRIDFAFKQLFGTNGSEDILIAFLNAMLQESLESPIASLQLEDPHLHREHANDKLS 64 Query: 65 IFDIWAKTVEGKLINIEMQLFNKYDMEKRTLYYWSKRYSGQLQTGGRYTELKKCVTINIL 124 I DI A G +N+E+QL N +DM KR+LYYW K Y+ QLQ Y+ L+K +TIN+L Sbjct: 65 ILDISATLGTGTKVNVEIQLNNNHDMMKRSLYYWGKLYTSQLQKWMPYSALRKTITINLL 124 Query: 125 NYKVLPNEHTHSVFHLREDISGAP----LTDDIEIHFLELPKLN-----QPAVPGEGGLI 175 N+ + + H FH + + L+DDIEIH +E+PKL + P + Sbjct: 125 NFIMFLD---HKEFHTKGTLWNTQQQKLLSDDIEIHIVEIPKLTEQWHEEKVNPWKDPFA 181 Query: 176 NWLLFLKGSDNSN----WEVLRMNE-PALRKAMETLEFLSQDSEARRKYEERQKALHDEA 230 WLL L +++ + E + MN+ P L+KA+ E +SQDS R+ Y+ R+K L DEA Sbjct: 182 RWLLLLSANEDEHLTKLLEDIAMNQDPILQKAINKWERMSQDSSFRQAYDAREKVLMDEA 241 Query: 231 SQRDGAQREGFAKGMQEGLQAGMQAGMQEGLQ 262 ++ A+ EG +GM++GL+ G++ G+++G++ Sbjct: 242 AKFAHAETEGMKRGMEKGLEKGIEQGIEQGIE 273 >ref|NP_847267.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28753.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 325 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 166/270 (61%), Gaps = 17/270 (6%) Query: 7 LDPRVDFVFKRIFASENNKDVLLAFLNHIFMDAGDAPLDEVILLNPYTDKDDPQDKLSIF 66 ++ R+DF FK++F + ++D+L+AFLN + ++ ++P+ + L +P+ ++ DKLSI Sbjct: 1 MNLRIDFAFKQLFGTNGSEDILIAFLNAMLQESLESPIASLQLEDPHLHREHANDKLSIL 60 Query: 67 DIWAKTVEGKLINIEMQLFNKYDMEKRTLYYWSKRYSGQLQTGGRYTELKKCVTINILNY 126 DI A G +N+E+QL N +DM KR+LYYW K Y+ QLQ Y+ L+K +TIN+LN+ Sbjct: 61 DISATLGTGTKVNVEIQLNNNHDMMKRSLYYWGKLYTSQLQKWMPYSALRKTITINLLNF 120 Query: 127 KVLPNEHTHSVFHLREDISGAP----LTDDIEIHFLELPKLN-----QPAVPGEGGLINW 177 + + H FH + + L+DDIEIH +E+PKL + P + W Sbjct: 121 IMFLD---HKEFHTKGTLWNTQQQKLLSDDIEIHIVEIPKLTEQWHEEKVNPWKDPFARW 177 Query: 178 LLFLKGSDNSN----WEVLRMNE-PALRKAMETLEFLSQDSEARRKYEERQKALHDEASQ 232 LL L +++ + E + MN+ P L+KA+ E +SQDS R+ Y+ R+K L DEA++ Sbjct: 178 LLLLSANEDEHLTKLLEDIAMNQDPILQKAINKWERMSQDSSFRQAYDAREKVLMDEAAK 237 Query: 233 RDGAQREGFAKGMQEGLQAGMQAGMQEGLQ 262 A+ EG +GM++GL+ G++ G+++G++ Sbjct: 238 FAHAETEGMKRGMEKGLEKGIEQGIEQGIE 267 >emb|CAD30163.1| conserved hypothetical protein [Bacillus thuringiensis serovar israelensis] Length = 333 Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 101/263 (38%), Positives = 160/263 (60%), Gaps = 11/263 (4%) Query: 5 ELLDPRVDFVFKRIFASENNKDVLLAFLNHIFMDAGDAPLDEVILLNPYTDKDDPQDKLS 64 +L++ R+DF FK++F + ++D+LL FLN + D+ ++ + + +P+ ++ +DKLS Sbjct: 35 KLVNLRIDFAFKQLFGTSGSEDILLTFLNAMLADSLESLIQSLQFEDPHLHREHEEDKLS 94 Query: 65 IFDIWAKTVEGKLINIEMQLFNKYDMEKRTLYYWSKRYSGQLQTGGRYTELKKCVTINIL 124 I D+ A G INIE+QL N +D+ KR+LYYWSK Y+ QL+ G Y+ L K +TIN+L Sbjct: 95 ILDVSATLDTGTKINIEIQLNNNHDLLKRSLYYWSKLYASQLKKGMPYSSLHKTITINLL 154 Query: 125 NYKVLPN-EHTHSVFHLREDISGAPLTDDIEIHFLELPKLNQ-----PAVPGEGGLINWL 178 N+ + + E H+ L L+DDIEIH +E+PKL Q P E + WL Sbjct: 155 NFVMFKDYEAFHTTGKLWNMQQQQLLSDDIEIHVVEIPKLLQQWREEKVNPWEDSFVRWL 214 Query: 179 LFLKGSDNSN----WEVLRMNE-PALRKAMETLEFLSQDSEARRKYEERQKALHDEASQR 233 L L +++ + E + MN+ P L+KA++ E +SQD+ R+ YE R+K L DEA+ Sbjct: 215 LLLPANEDEHLTHTLEAIAMNQDPILQKAIDKWEHMSQDASFRQAYEVREKILMDEAAGI 274 Query: 234 DGAQREGFAKGMQEGLQAGMQAG 256 A +G +GM++GL+ G+Q G Sbjct: 275 AHALNKGREEGMKKGLEQGVQQG 297 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 439,846,773 Number of extensions: 18409566 Number of successful extensions: 45092 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 45014 Number of HSP's successfully gapped: 54 Length of query: 349 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 223 Effective length of database: 415,135,104 Effective search space: 92575128192 Effective search space used: 92575128192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)