BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0035.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN04562.1| sporulation sigma-E factor processing peptidase [... 155 1e-36 gb|AAN04558.1| sporulation sigma-E factor processing peptidase ... 154 2e-36 ref|NP_980245.1| sporulation sigma-E factor processing peptidase... 153 4e-36 ref|NP_833625.1| Sporulation sigma-E factor processing peptidase... 152 1e-35 ref|NP_846284.1| sporulation sigma-E factor processing peptidase... 149 6e-35 >gb|AAN04562.1| sporulation sigma-E factor processing peptidase [Bacillus mycoides] Length = 319 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 163/308 (52%), Gaps = 12/308 (3%) Query: 1 VNPLVVYIDLIFAANLLIDGILLWLTGWLVKLKVSWWRLILSALVGALYVVMMFVPELSF 60 VN LVVY D+++ N ID +LL LT ++K ++ WRL+L A +G+ V+ F P S Sbjct: 12 VNCLVVYADIVWLLNACIDFLLLLLTATVLKKRIKRWRLVLGAFIGSTIVIFAFTPFASM 71 Query: 61 LYTFLIKFGLSVVMLWIAFGFRNLQSYLRALGAFYMINFAAAGGIVGVHYLLQSSGDIWN 120 + ++K S+++++ AFGF ++Y + + FY + F GG++G HY LQ++ ++ N Sbjct: 72 MTHPIMKLLYSLLIVYTAFGFSTFRNYTQTVFTFYFVTFMVGGGLIGTHYFLQTN-EMVN 130 Query: 121 GILFTS--SGGQAYRLKIGFWXXXXXXXXXXXXXXXXQSSKVRREQLETYIGEVCVEIEG 178 G++ + S G + + +K+ +Q I +V +++ G Sbjct: 131 GLVQSKSVSYGDPISWVFVIFGFPVIYYFSKKRIESVEVTKIHYDQ----IVKVEIQLAG 186 Query: 179 VSVSCPGLLDTGNRLNDPLTRIPVMVMEASLWEGHLPASWKGRLTE-ISSDKLLLEADGQ 237 + GL+D+GN+L DPLT+ PVM+M S E LPA W LTE I S + + Sbjct: 187 EELELAGLIDSGNQLYDPLTKTPVMIMHISSLEHWLPA-W---LTEQIYSKTEIPQIPEN 242 Query: 238 SFAWQDRLRLVPYRGVNRGASLMLALKPDLVTIKLGEETFFSKRVLIGLDGGTLSGDGAY 297 W +LRL+P+R V + A+KPD V + + +VLIGL+ LS G Y Sbjct: 243 DSGWATKLRLIPFRAVGVENQFLWAIKPDCVRVYHEGSSVVVNKVLIGLNTQQLSTIGEY 302 Query: 298 RAVIHPDL 305 + ++HP + Sbjct: 303 QCIVHPKM 310 >gb|AAN04558.1| sporulation sigma-E factor processing peptidase [Bacillus mycoides] Length = 319 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 12/308 (3%) Query: 1 VNPLVVYIDLIFAANLLIDGILLWLTGWLVKLKVSWWRLILSALVGALYVVMMFVPELSF 60 VN LVVY D+++ N ID +LL LT ++K ++ WRL+L A +G+ V+ F P S Sbjct: 12 VNCLVVYADIVWLLNACIDFLLLLLTATVLKKRIKRWRLVLGAFIGSTIVIFAFTPFASM 71 Query: 61 LYTFLIKFGLSVVMLWIAFGFRNLQSYLRALGAFYMINFAAAGGIVGVHYLLQSSGDIWN 120 + ++K S+++++ AFGF ++Y + + FY + F GG++G H+ LQ++ ++ N Sbjct: 72 MTHPIMKLLYSLLIVYTAFGFSTFRNYAQTVFTFYFVTFMVGGGLIGTHFFLQTN-EMVN 130 Query: 121 GILFTS--SGGQAYRLKIGFWXXXXXXXXXXXXXXXXQSSKVRREQLETYIGEVCVEIEG 178 G++ + S G + + +K+ +Q I +V +++ G Sbjct: 131 GLVQSKSVSYGDPISWLFVIFGFPVIYYFSKKRIESVEVTKIHYDQ----IVKVKIQLVG 186 Query: 179 VSVSCPGLLDTGNRLNDPLTRIPVMVMEASLWEGHLPASWKGRLTE-ISSDKLLLEADGQ 237 + GL+D+GN+L DPLT+ PVM+M S E LP W LTE I S + + Sbjct: 187 EELELAGLIDSGNQLYDPLTKTPVMIMHISSLEHCLPV-W---LTEQIYSKTEIPQIPEN 242 Query: 238 SFAWQDRLRLVPYRGVNRGASLMLALKPDLVTIKLGEETFFSKRVLIGLDGGTLSGDGAY 297 W +LRL+P+R V + A+KPD V + + +VLIGL+ LS +G Y Sbjct: 243 DSGWATKLRLIPFRAVGVENQFLWAIKPDCVQVYHEGSSIVVNKVLIGLNTQQLSSNGEY 302 Query: 298 RAVIHPDL 305 + ++HP + Sbjct: 303 QCIVHPKM 310 >ref|NP_980245.1| sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 10987] gb|AAS42853.1| sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 10987] Length = 308 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 12/308 (3%) Query: 1 VNPLVVYIDLIFAANLLIDGILLWLTGWLVKLKVSWWRLILSALVGALYVVMMFVPELSF 60 +N LVVY D+++ N ID +LL LT ++K K+ WRL+L AL+G+ V+ F P S Sbjct: 1 MNCLVVYADVVWLLNACIDFLLLLLTATVLKKKIKRWRLVLGALIGSTIVIFAFTPFASV 60 Query: 61 LYTFLIKFGLSVVMLWIAFGFRNLQSYLRALGAFYMINFAAAGGIVGVHYLLQSSGDIWN 120 + ++K S+++++ AFGF ++Y + + FY + F GG++G H+ LQ++ ++ N Sbjct: 61 MTHPIMKLLYSLLIVYTAFGFTTFRNYAQTVFTFYFVTFMVGGGLMGTHFFLQTN-EMVN 119 Query: 121 GILFTS--SGGQAYRLKIGFWXXXXXXXXXXXXXXXXQSSKVRREQLETYIGEVCVEIEG 178 G++ + S G + + +K+ +Q I ++ V++ Sbjct: 120 GLVQSQSISYGDPISWLFVIFGFPVIYYFSKKRIESVEVTKIHYDQ----IVKLKVQLAE 175 Query: 179 VSVSCPGLLDTGNRLNDPLTRIPVMVMEASLWEGHLPASWKGRLTE-ISSDKLLLEADGQ 237 + GL+D+GN+L DPLT+ PVM+M S E LPA W LTE I S + + Sbjct: 176 EELELAGLIDSGNQLYDPLTKTPVMIMHISSLEHCLPA-W---LTEQIYSKTEIPQIPEN 231 Query: 238 SFAWQDRLRLVPYRGVNRGASLMLALKPDLVTIKLGEETFFSKRVLIGLDGGTLSGDGAY 297 W +LRL+P+R V + + A+KPD V I + +VLIGL+ LS +G Y Sbjct: 232 DSGWATKLRLIPFRAVGVESQFLWAIKPDSVQIYHEGSSIVVNKVLIGLNTQQLSTNGEY 291 Query: 298 RAVIHPDL 305 + ++HP + Sbjct: 292 QCIVHPKM 299 >ref|NP_833625.1| Sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 14579] gb|AAP10826.1| Sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 14579] Length = 305 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 162/305 (53%), Gaps = 12/305 (3%) Query: 4 LVVYIDLIFAANLLIDGILLWLTGWLVKLKVSWWRLILSALVGALYVVMMFVPELSFLYT 63 +VVY D+++ N ID +LL LT ++K K+ WRL+L A +G+ V+ F P S + Sbjct: 1 MVVYADVVWLLNACIDFLLLLLTATVLKKKIKRWRLVLGAFIGSTIVIFAFTPFASMMTH 60 Query: 64 FLIKFGLSVVMLWIAFGFRNLQSYLRALGAFYMINFAAAGGIVGVHYLLQSSGDIWNGIL 123 ++K S+++++ AFGF ++Y + + FY + F GG++G H+ LQ++ ++ NG++ Sbjct: 61 PIMKLLYSLLIVYTAFGFTTFRNYAQTVFTFYFVTFMVGGGLIGTHFFLQTN-EMVNGLV 119 Query: 124 FTS--SGGQAYRLKIGFWXXXXXXXXXXXXXXXXQSSKVRREQLETYIGEVCVEIEGVSV 181 + S G + + +K+ +Q I +V +++ + Sbjct: 120 QSQSISYGDPISWLFVIFGFPVIYYFSKKRIESVEVTKIHYDQ----IVKVKIQLAEEEL 175 Query: 182 SCPGLLDTGNRLNDPLTRIPVMVMEASLWEGHLPASWKGRLTE-ISSDKLLLEADGQSFA 240 GL+D+GN+L DPLT+ PVM+M S E LP SW LTE I S + + Sbjct: 176 ELAGLIDSGNQLYDPLTKTPVMIMHVSSLEHCLP-SW---LTEQIYSKTEIPQIPENDSG 231 Query: 241 WQDRLRLVPYRGVNRGASLMLALKPDLVTIKLGEETFFSKRVLIGLDGGTLSGDGAYRAV 300 W +LRL+P+R V + + A+KPD V + + +VLIGL+ LS +G Y+ + Sbjct: 232 WATKLRLIPFRAVGVESQFLWAIKPDSVQVDHEGSSIVVNKVLIGLNTQQLSTNGEYQCI 291 Query: 301 IHPDL 305 +HP + Sbjct: 292 VHPKM 296 >ref|NP_846284.1| sporulation sigma-E factor processing peptidase [Bacillus anthracis str. Ames] gb|AAP27770.1| sporulation sigma-E factor processing peptidase [Bacillus anthracis str. Ames] Length = 308 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 163/308 (52%), Gaps = 12/308 (3%) Query: 1 VNPLVVYIDLIFAANLLIDGILLWLTGWLVKLKVSWWRLILSALVGALYVVMMFVPELSF 60 +N LVVY D+++ N ID +LL LT ++K K+ WRL+L A +G+ V+ F P S Sbjct: 1 MNCLVVYADVVWLLNACIDFLLLLLTATVLKKKIKRWRLVLGAFIGSTIVIFAFTPFASM 60 Query: 61 LYTFLIKFGLSVVMLWIAFGFRNLQSYLRALGAFYMINFAAAGGIVGVHYLLQSSGDIWN 120 + ++K S+++++ AFGF ++Y + + FY + F GG++G H+ LQ++ ++ N Sbjct: 61 MTHPIMKLLYSLLIVYTAFGFTTFRNYTQTVFTFYFVTFMVGGGLMGTHFFLQTN-EMVN 119 Query: 121 GILFTS--SGGQAYRLKIGFWXXXXXXXXXXXXXXXXQSSKVRREQLETYIGEVCVEIEG 178 G++ + S G + + +K+ +Q I ++ +++ Sbjct: 120 GLVQSQSISYGDPISWLFVIFGFPVIYYFSKKRIESVEVTKIHYDQ----IVKLKIQLAE 175 Query: 179 VSVSCPGLLDTGNRLNDPLTRIPVMVMEASLWEGHLPASWKGRLTE-ISSDKLLLEADGQ 237 + GL+D+GN+L DPLT+ PVM+M S E LPA W LTE I S + + Sbjct: 176 EELELAGLIDSGNQLYDPLTKTPVMIMHISSLEHCLPA-W---LTEQIYSKTEIPQIPEN 231 Query: 238 SFAWQDRLRLVPYRGVNRGASLMLALKPDLVTIKLGEETFFSKRVLIGLDGGTLSGDGAY 297 W +LRL+P+R V + A+KP+ V I + +VLIGL+ LS +G Y Sbjct: 232 DSGWATKLRLIPFRAVGVENQFLWAIKPESVQIYHEGSSIVVNKVLIGLNTQQLSTNGEY 291 Query: 298 RAVIHPDL 305 + ++HP + Sbjct: 292 QCIVHPKM 299 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 448,408,770 Number of extensions: 17461618 Number of successful extensions: 56751 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 56730 Number of HSP's successfully gapped: 18 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)