BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0028.p
         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243414.1| BH2548~unknown conserved protein [Bacillus halo...    76   2e-13
ref|ZP_00182134.1| hypothetical protein Exigu257601 [Exiguobacte...    72   6e-12
ref|NP_833618.1| Integral membrane protein [Bacillus cereus ATCC...    71   1e-11
ref|NP_980238.1| ylmG protein [Bacillus cereus ATCC 10987] >gi|4...    69   4e-11
ref|NP_389423.1| similar to hypothetical proteins [Bacillus subt...    66   2e-10

>ref|NP_243414.1| BH2548~unknown conserved protein [Bacillus halodurans]
 pir||D83968 hypothetical protein BH2548 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB06267.1| BH2548~unknown conserved protein [Bacillus halodurans]
          Length = 84

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYI 59
          MSW PN R+S  G+ LG +VEPYL PFR+IIP L G IDISPI+A+F L FA+ G+  I
Sbjct: 25 MSWFPNARESSFGQFLGSIVEPYLAPFRKIIPPL-GMIDISPIVAIFALTFARYGVHAI 82


>ref|ZP_00182134.1| hypothetical protein Exigu257601 [Exiguobacterium sp. 255-15]
          Length = 90

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYI 59
          +SW PN R+S  G++L  LVEP+L PFRRIIP + G +DISPI+A  VL  A+ G++ I
Sbjct: 30 LSWFPNARESRFGQVLAMLVEPFLAPFRRIIPPIGGMLDISPIVAFLVLNLAQAGIRAI 88


>ref|NP_833618.1| Integral membrane protein [Bacillus cereus ATCC 14579]
 gb|AAP10819.1| Integral membrane protein [Bacillus cereus ATCC 14579]
          Length = 87

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYIV 60
          +SW P  ++S  GE L ++ EPYL PFRR IP L G IDISPI+A+F L+ AK GL  ++
Sbjct: 25 LSWFPGAKESSFGEFLARICEPYLEPFRRFIPPL-GMIDISPIVAIFALKLAKTGLFSLL 83

Query: 61 AY 62
          +Y
Sbjct: 84 SY 85


>ref|NP_980238.1| ylmG protein [Bacillus cereus ATCC 10987]
 gb|AAS42846.1| ylmG protein [Bacillus cereus ATCC 10987]
          Length = 87

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYIV 60
          +SW P  ++S  GE L ++ EPYL PFRR IP L G IDISP++A+F L  A NGL  + 
Sbjct: 25 LSWFPGAKESTFGEFLARICEPYLEPFRRFIPPL-GMIDISPLVAIFALRLATNGLVSLF 83

Query: 61 AY 62
           Y
Sbjct: 84 GY 85


>ref|NP_389423.1| similar to hypothetical proteins [Bacillus subtilis]
 pir||G69876 conserved hypothetical protein ylmG [imported] - Bacillus
          subtilis
 emb|CAB13414.1| ylmG [Bacillus subtilis subsp. subtilis str. 168]
          Length = 90

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGL 56
          MSW+P+ R++ +G  L  + EPYL PFR+IIP +   +DISPI+A+ VL FA  GL
Sbjct: 27 MSWVPSTRETAVGRFLASICEPYLEPFRKIIPPI-AMLDISPIVAILVLRFATTGL 81


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.331    0.151    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 97,276,255
Number of extensions: 3159067
Number of successful extensions: 8025
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8063
Number of HSP's successfully gapped: 15
Length of query: 64
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 29
Effective length of database: 662,209,113
Effective search space: 19204064277
Effective search space used: 19204064277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 120 (50.8 bits)