BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0016.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389434.1| carbamoyl-phosphate synthetase (glutaminase sub... 476 e-133 ref|NP_692411.1| carbamoyl-phosphate synthase small subunit [Oce... 476 e-133 sp|P52557|CARA_BACCL Carbamoyl-phosphate synthase, pyrimidine-sp... 474 e-132 ref|NP_833607.1| Carbamoyl-phosphate synthase small chain [Bacil... 454 e-126 ref|NP_980227.1| carbamoyl-phosphate synthase, small subunit [Ba... 451 e-125 >ref|NP_389434.1| carbamoyl-phosphate synthetase (glutaminase subunit) [Bacillus subtilis] sp|P25993|CARA_BACSU Carbamoyl-phosphate synthase, pyrimidine-specific, small chain (Carbamoyl-phosphate synthetase glutamine chain) pir||E39845 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5), pyrimidine-repressible, small chain pyrAA - Bacillus subtilis gb|AAA21269.1| glutaminase of carbamyl phosphate synthetase [Bacillus subtilis] emb|CAB13425.1| carbamoyl-phosphate synthetase (glutaminase subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 364 Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust. Identities = 218/354 (61%), Positives = 281/354 (79%), Gaps = 4/354 (1%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ RL+L++G +F G AFG+ GEVVFNTG+TGYQE+LSDPSYCGQIVT+TYPLIGN Sbjct: 1 MKRRLVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ PFV G +++ +PSNWR+ Y++D+ LK IPG+ IDTR LTR+I Sbjct: 61 YGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R G +K +S++ +E +++ + +T + RNQV++ S AY SPG +RIVLVD+G Sbjct: 121 RTAGALKGTFASSDEDIEAVLKRLNETELP--RNQVSQVSAKTAYPSPGRGKRIVLVDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+VVP+++TA+E+ +L PDGI LSNGPGDPKDVP A++ I +LG Sbjct: 179 MKHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVLG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALACGA+TEK+KFGHRG NHPVKEL +G+ +TSQNHGYTV+ S+ Sbjct: 239 KVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVS--SI 296 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMI 354 KT+LEVTHI ND T+EGLKH PAF+VQYHPEA+PGP D+++LFDRF++MI Sbjct: 297 SKTELEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMI 350 >ref|NP_692411.1| carbamoyl-phosphate synthase small subunit [Oceanobacillus iheyensis HTE831] sp|Q8CXH8|CARA_OCEIH Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthetase glutamine chain) dbj|BAC13446.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit [Oceanobacillus iheyensis HTE831] Length = 366 Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust. Identities = 217/357 (60%), Positives = 277/357 (77%), Gaps = 2/357 (0%) Query: 4 RLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGNYGI 63 +L+L+DGT+F GTAFG++ E +GE+VFNTG+TGYQEV++DPSYCGQ VT+TYPLIGNYGI Sbjct: 5 KLILEDGTVFNGTAFGSDAESSGEIVFNTGMTGYQEVITDPSYCGQFVTLTYPLIGNYGI 64 Query: 64 TRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRIIRHY 123 RDDFE+V PF+HG VV+ + PSN+R E ++D+ L+ + IPGI+ IDTR LTRIIR + Sbjct: 65 NRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKH 124 Query: 124 GTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYGAKT 183 GTM+A++ K + ++E + E R+QV RTST Y PG R+V+VD+GAK Sbjct: 125 GTMRAVMVDEQKNEQHVIEQL--RLAEMPRDQVKRTSTIKPYVVPGRGLRVVMVDFGAKH 182 Query: 184 GILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLGEYP 243 GILREL R C + VVPH+ +A+ I RL PDGI L+NGPGDPKDVP A++ I +LLG+ P Sbjct: 183 GILRELTRRDCHITVVPHNYSAEAILRLKPDGIMLTNGPGDPKDVPEAIEMIKQLLGQIP 242 Query: 244 IFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESVRKT 303 IFGICLGHQL ALACGADTEK+KFGHRG NHPVK+L +G+ ++TSQNH Y VN S+ T Sbjct: 243 IFGICLGHQLLALACGADTEKMKFGHRGANHPVKDLLAGKTYLTSQNHSYAVNVSSLVNT 302 Query: 304 DLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 DLE+T I ND TVEG++HT +PAFSVQYHPEA+PGP D+++LFD FL +I K K Sbjct: 303 DLELTQIALNDDTVEGIRHTAFPAFSVQYHPEASPGPEDTNFLFDEFLNLIKASKVK 359 >sp|P52557|CARA_BACCL Carbamoyl-phosphate synthase, pyrimidine-specific, small chain (Carbamoyl-phosphate synthetase glutamine chain) pir||I40168 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) - Bacillus caldolyticus emb|CAA51738.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) [Bacillus caldolyticus] Length = 364 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/360 (62%), Positives = 278/360 (77%), Gaps = 2/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L+DG+ F G FG+ E TGEVVFNTG+TGYQE+LSDPSYCGQIVTMTYPLIGN Sbjct: 1 MKRQLILEDGSFFVGERFGSLKETTGEVVFNTGMTGYQEILSDPSYCGQIVTMTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFE++RP VHGF+V+ PSNWR E ++D+ LKE GIPG+S IDTR LTR+I Sbjct: 61 YGINRDDFEAIRPHVHGFIVKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R YGT+K ++ + V+ + +E R+QV R ST +AY SPG ERIVL+D+G Sbjct: 121 RQYGTLKGMICGLD--VDPVEAAAKLRAMEWPRDQVRRVSTKSAYPSPGRGERIVLIDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+V+P++ TA+E+ +PDG+ LSNGPGDPKDVP A++ I +LG Sbjct: 179 MKHGILRELNKRNCDVIVLPYNATAEEVLGWHPDGVMLSNGPGDPKDVPEAIEMIRGILG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALACGA+TEK+KFGHRG NHPVK+L +G+ ITSQNHGYTV ES+ Sbjct: 239 KVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKDLRTGKVAITSQNHGYTVTHESL 298 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 T LEVTHI ND TVEGL+H PAF+VQYHPEA+PGP D++ LFD FL +I + K Sbjct: 299 SGTRLEVTHIALNDGTVEGLRHLDVPAFTVQYHPEASPGPEDANPLFDEFLALIREFNKK 358 >ref|NP_833607.1| Carbamoyl-phosphate synthase small chain [Bacillus cereus ATCC 14579] gb|AAP10808.1| Carbamoyl-phosphate synthase small chain [Bacillus cereus ATCC 14579] Length = 373 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/360 (60%), Positives = 270/360 (75%), Gaps = 3/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L+DGT+ GT FG E EK+GEVVF TG+TGYQE LSDPSYCGQIVT TYPLIGN Sbjct: 9 MKRQLILEDGTVLIGTGFGGEIEKSGEVVFTTGMTGYQETLSDPSYCGQIVTFTYPLIGN 68 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ P V+G +V PSN+R E S++D LKE IPG++ IDTR LTR I Sbjct: 69 YGINRDDFESIHPSVNGLIVNEICNHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKI 128 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R YGT++ L + VE ++ + T + V R ST Y SPG R+VLVD+G Sbjct: 129 RQYGTLRGRLCNMDADVEYIVSQLKATV---FTDHVKRVSTKDPYPSPGRGHRVVLVDFG 185 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+VVP++ TA+EI RL+PDGI LSNGPGDPKDVP A++ + +++G Sbjct: 186 MKHGILRELNKRDCDVIVVPYNTTAEEILRLSPDGIMLSNGPGDPKDVPEAIEMLKDIIG 245 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALA GA+T KLKFGHRG NHPVK L +G+ ITSQNHGY V EESV Sbjct: 246 KVPLFGICLGHQLFALASGANTSKLKFGHRGLNHPVKNLATGKVAITSQNHGYAVEEESV 305 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 TDLE+TH+ ND TVEGL+H ++PAF+VQYHPEA+ GP D++ LF+ FL MI + K + Sbjct: 306 ENTDLEITHVALNDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFKKE 365 >ref|NP_980227.1| carbamoyl-phosphate synthase, small subunit [Bacillus cereus ATCC 10987] gb|AAS42835.1| carbamoyl-phosphate synthase, small subunit [Bacillus cereus ATCC 10987] Length = 365 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/360 (60%), Positives = 270/360 (75%), Gaps = 3/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L+DGT+ GT FG E EK+GEVVF TG+TGYQE LSDPSYCGQIVT TYPLIGN Sbjct: 1 MKRQLILEDGTVLIGTGFGGEIEKSGEVVFTTGMTGYQETLSDPSYCGQIVTFTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ P V+G +V PSN+R E S++D LKE IPG++ IDTR LTR I Sbjct: 61 YGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R YGT++ L + VE ++ + T + V R ST Y SPG R+VLVD+G Sbjct: 121 RQYGTLRGRLCNMDADVEYIVSQLKATV---FTDHVKRVSTKDPYPSPGRGHRVVLVDFG 177 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+VVP++ TA+EI RL+PDGI LSNGPGDPKDVP A++ + +++G Sbjct: 178 MKHGILRELNKRDCDVIVVPYNTTAEEILRLSPDGIMLSNGPGDPKDVPEAIEMLKDIIG 237 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALA GA+T KLKFGHRG NHPVK L +G+ ITSQNHGY V EESV Sbjct: 238 KVPLFGICLGHQLFALASGANTSKLKFGHRGLNHPVKNLATGKVAITSQNHGYAVEEESV 297 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 T+LE+TH+ ND TVEGL+H ++PAF+VQYHPEA+ GP D++ LF+ FL MI + K + Sbjct: 298 ENTELEITHVALNDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFKKE 357 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 601,354,986 Number of extensions: 25470487 Number of successful extensions: 70054 Number of sequences better than 1.0e-05: 1572 Number of HSP's gapped: 67868 Number of HSP's successfully gapped: 1594 Length of query: 392 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 264 Effective length of database: 409,704,906 Effective search space: 108162095184 Effective search space used: 108162095184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)