BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0014.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180689.1| hypothetical protein Mther138901 [Moorella th... 205 8e-52 ref|ZP_00099041.1| COG0284: Orotidine-5'-phosphate decarboxylase... 196 5e-49 ref|NP_833603.1| Orotidine 5'-phosphate decarboxylase [Bacillus ... 193 3e-48 ref|NP_980223.1| orotidine 5'-phosphate decarboxylase [Bacillus ... 192 9e-48 ref|NP_657853.1| OMPdecase, Orotidine 5'-phosphate decarboxylase... 192 1e-47 >ref|ZP_00180689.1| hypothetical protein Mther138901 [Moorella thermoacetica ATCC 39073] Length = 248 Score = 205 bits (522), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 110/223 (49%), Positives = 140/223 (62%), Gaps = 5/223 (2%) Query: 76 RLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDVKMH 135 +++VALDVPD+ L+D+L KVG++ F AAGP +R +K RG VF D+K H Sbjct: 14 KIIVALDVPDLAAGEKLVDRLSPYAGMFKVGLEFFTAAGPAAVRMVKERGGRVFADLKFH 73 Query: 136 DIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSL--HPSLHIPLIIAVT 193 DIPNTV G A +L LGVDM NVH + P+ P+IIAVT Sbjct: 74 DIPNTVAGAARALVRLGVDMLNVHAAGGKAMLQAAAAAVREEAAALNRPA---PVIIAVT 130 Query: 194 QLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRTV 253 LTS +E + E+GI V + V R+A LA EAGL GVVASP+E I ACGP+F V Sbjct: 131 VLTSLDREALRCEVGIEREVEEQVARWALLAREAGLDGVVASPREIRAIREACGPEFVIV 190 Query: 254 TPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADP 296 TPG+RPAG+ DQ RVMTP +A+R+G+ +LV+GRPITAA DP Sbjct: 191 TPGVRPAGSDRGDQRRVMTPAEALREGASYLVIGRPITAAPDP 233 >ref|ZP_00099041.1| COG0284: Orotidine-5'-phosphate decarboxylase [Desulfitobacterium hafniense] Length = 244 Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 140/228 (61%) Query: 72 EMAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLD 131 E ++MVA+DV E+A L D+L+G C++KVGM+L+ AAG G IRELK +G+ +FLD Sbjct: 11 ENNKKVMVAMDVNSREKALALADQLQGSGCWLKVGMELYNAAGAGIIRELKDKGFPIFLD 70 Query: 132 VKMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIA 191 +K+HDIPNTV L G D+ +H + II Sbjct: 71 LKLHDIPNTVESAVRVLAGYGADVLTIHCSGGHDMMARAVQATHEVKKQKNAEERMKIIG 130 Query: 192 VTQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFR 251 +T LTS +E + +++G+ T+ + VV A+L +AG+ GVVAS QE+A++ GPDF Sbjct: 131 ITVLTSLDEERLQQDLGVGRTLPEQVVALAELGQKAGIDGVVASAQESAILRRHVGPDFV 190 Query: 252 TVTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQA 299 +TPGIRP G+ DQ+R +TP +A+ GS +LVVGRPIT AA+PRQA Sbjct: 191 VITPGIRPKGSETHDQARTLTPKEALEAGSSYLVVGRPITQAANPRQA 238 >ref|NP_833603.1| Orotidine 5'-phosphate decarboxylase [Bacillus cereus ATCC 14579] sp|Q819S6|PYRF_BACCR Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) gb|AAP10804.1| Orotidine 5'-phosphate decarboxylase [Bacillus cereus ATCC 14579] Length = 238 Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 135/235 (57%), Gaps = 2/235 (0%) Query: 73 MAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDV 132 M+ L+VALD P ++ + EG ++KVGM+LFY GP I LK +G+ +FLD+ Sbjct: 1 MSQSLIVALDFPGKQEVEQFLHHFEGEELFVKVGMELFYKEGPAIITYLKEKGHKIFLDL 60 Query: 133 KMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIAV 192 K+HDIPNTV+ SL L VDM NVH P+ IAV Sbjct: 61 KLHDIPNTVKSAMRSLASLDVDMVNVHAAGGSSMMKAAIEGLEE--GKQEGKERPICIAV 118 Query: 193 TQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRT 252 TQLTSTS+ MM +EIGI T+ + V YAKL E+GL GVV S E + CG +F T Sbjct: 119 TQLTSTSEAMMKKEIGIEKTLEEAVAHYAKLTKESGLDGVVCSTLEVPKLREVCGNEFVT 178 Query: 253 VTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 VTPGIR A ++DQ RV TP +A GS ++VVGR IT A +P +A T+ ++ Sbjct: 179 VTPGIRLASDDVNDQVRVATPKRARELGSSYIVVGRSITKAENPLEAYKTVKQQW 233 >ref|NP_980223.1| orotidine 5'-phosphate decarboxylase [Bacillus cereus ATCC 10987] gb|AAS42831.1| orotidine 5'-phosphate decarboxylase [Bacillus cereus ATCC 10987] Length = 238 Score = 192 bits (488), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 73 MAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDV 132 M+ L+VALD P + + EG ++KVGM+LFY GP I LK +G+ +FLD+ Sbjct: 1 MSQSLIVALDFPGKQDVEQFLRHFEGEELFVKVGMELFYKEGPAIITYLKEKGHKIFLDL 60 Query: 133 KMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIAV 192 K+HDIPNTV+ SL L VDM NVH P+ IAV Sbjct: 61 KLHDIPNTVKSAMRSLASLDVDMVNVHAAGGSSMMKAAIEGLEE--GKQEGKERPICIAV 118 Query: 193 TQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRT 252 TQLTSTS+ MM +EIGI T+ + V YAKL E+GL GVV S E + CG +F T Sbjct: 119 TQLTSTSEAMMKKEIGIEKTLEEAVAHYAKLTKESGLDGVVCSTLEVPKLREVCGNEFVT 178 Query: 253 VTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 VTPGIR A ++DQ RV TP +A GS ++VVGR IT A +P +A T+ ++ Sbjct: 179 VTPGIRLASDDVNDQVRVATPKRARELGSSYIVVGRSITKAENPLEAYKTVKQQW 233 >ref|NP_657853.1| OMPdecase, Orotidine 5'-phosphate decarboxylase [Bacillus anthracis A2012] ref|NP_846263.1| orotidine 5'-phosphate decarboxylase [Bacillus anthracis str. Ames] sp|Q81WF5|PYRF_BACAA Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) gb|AAP27749.1| orotidine 5'-phosphate decarboxylase [Bacillus anthracis str. Ames] Length = 238 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 73 MAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDV 132 M+ L+VALD P + + EG ++KVGM+LFY GP I LK +G+ +FLD+ Sbjct: 1 MSQSLIVALDFPGKQDVEQFLRHFEGEELFVKVGMELFYKEGPAIITYLKEKGHKIFLDL 60 Query: 133 KMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIAV 192 K+HDIPNTV+ SL L VDM NVH P+ IAV Sbjct: 61 KLHDIPNTVKSAMRSLASLDVDMVNVHAGGGSSMMKAAIEGLEE--GKQEGKERPICIAV 118 Query: 193 TQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRT 252 TQLTSTS+ MM +EIGI T+ + V YAKL E+GL GVV S E + CG +F T Sbjct: 119 TQLTSTSETMMKKEIGIEKTLEEAVAHYAKLTKESGLDGVVCSTLEVPKLREVCGSEFVT 178 Query: 253 VTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 VTPGIR A ++DQ RV TP +A GS ++VVGR IT A +P +A T+ ++ Sbjct: 179 VTPGIRLASDDVNDQVRVATPKRARELGSSYIVVGRSITKAENPLEAYKTVKQQW 233 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 386,949,017 Number of extensions: 13817662 Number of successful extensions: 35547 Number of sequences better than 1.0e-05: 447 Number of HSP's gapped: 35136 Number of HSP's successfully gapped: 462 Length of query: 310 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 185 Effective length of database: 417,850,203 Effective search space: 77302287555 Effective search space used: 77302287555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)