BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0024.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243950.1| BH3084~unknown conserved protein [Bacillus halo... 261 7e-69 ref|NP_928827.1| hypothetical protein [Photorhabdus luminescens ... 234 1e-60 ref|NP_253610.1| conserved hypothetical protein [Pseudomonas aer... 215 5e-55 gb|EAH06105.1| unknown [environmental sequence] 199 2e-50 ref|NP_886801.1| putative lysine decarboxylase [Bordetella bronc... 198 5e-50 >ref|NP_243950.1| BH3084~unknown conserved protein [Bacillus halodurans] pir||D84035 hypothetical protein BH3084 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06803.1| BH3084 [Bacillus halodurans] Length = 187 Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 120/184 (65%), Positives = 149/184 (80%) Query: 4 IAVFCGSRDGASPVYKESAHALGKVLAEHGITLIYGGATVGLMGEVADAALEAGGDVIGV 63 IAVFCGS +GAS VYKE A LGK LA GITL+YGGA+VG+MG VAD+ LEAGG+VIGV Sbjct: 3 IAVFCGSSNGASDVYKEGARQLGKELARRGITLVYGGASVGIMGAVADSVLEAGGEVIGV 62 Query: 64 IPHFLKSREIEHKHLTELILVDSMHERKLKMSELAEGFIALPGGPGTMEEYFEIFTWAQL 123 +P FL+ EI H HLT+LI+V++MHERK KM+ELA+GF+ALPGGPGT+EE+FEIFTWAQ+ Sbjct: 63 MPRFLEEPEISHPHLTKLIVVETMHERKAKMAELADGFLALPGGPGTLEEFFEIFTWAQI 122 Query: 124 GLHQKPCGILNVHHYYDPLIALFDQMAREQFMPDKHRSMVLTDVSPEGMIRQFLNYSPPP 183 GLHQKPCG+LN++HY+DPL+ L M+ EQF+ +K+RSM L P ++ QF Y PP Sbjct: 123 GLHQKPCGLLNINHYFDPLVTLLHHMSNEQFLHEKYRSMALVHTDPILLLDQFSTYEPPT 182 Query: 184 VKTY 187 VK Y Sbjct: 183 VKAY 186 >ref|NP_928827.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE13829.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 187 Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 106/187 (56%), Positives = 143/187 (76%) Query: 1 MKSIAVFCGSRDGASPVYKESAHALGKVLAEHGITLIYGGATVGLMGEVADAALEAGGDV 60 MKSIAV+CGS G S +YKE+ K L + +TLIYGGA+VG+MG VA+ L GG V Sbjct: 1 MKSIAVYCGSSLGISEIYKENVIIFAKELVKRNLTLIYGGASVGIMGTVANTVLAEGGKV 60 Query: 61 IGVIPHFLKSREIEHKHLTELILVDSMHERKLKMSELAEGFIALPGGPGTMEEYFEIFTW 120 IGVIP L+SREI HK+LTEL +V++MH+RK KM ELA+GF+ALPGG GT+EE+ E+FTW Sbjct: 61 IGVIPTLLESREISHKNLTELYVVETMHQRKNKMIELADGFVALPGGFGTLEEFSEVFTW 120 Query: 121 AQLGLHQKPCGILNVHHYYDPLIALFDQMAREQFMPDKHRSMVLTDVSPEGMIRQFLNYS 180 +Q+GLH KPCGILN++++YDPLIA+ ++MA EQF+ +K+R M + + P ++ +F Y Sbjct: 121 SQIGLHTKPCGILNINNFYDPLIAMINKMADEQFLHEKYRHMAIIEQDPAILLDRFNTYR 180 Query: 181 PPPVKTY 187 P +KTY Sbjct: 181 SPSIKTY 187 >ref|NP_253610.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01] sp|P48636|YDC3_PSEAE Hypothetical protein PA4923 pir||A83031 conserved hypothetical protein PA4923 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08308.1| conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 195 Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 100/181 (55%), Positives = 132/181 (72%) Query: 1 MKSIAVFCGSRDGASPVYKESAHALGKVLAEHGITLIYGGATVGLMGEVADAALEAGGDV 60 ++S+ VFCG+ GASPVY+E+A ALG+ LAE G+TL+YGG VGLMG VADAAL AGG+V Sbjct: 3 LRSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEV 62 Query: 61 IGVIPHFLKSREIEHKHLTELILVDSMHERKLKMSELAEGFIALPGGPGTMEEYFEIFTW 120 IG+IP L+ EI HK LT L +VD MH RK +M+ELA+ FIALPGG GT+EE FE++TW Sbjct: 63 IGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTW 122 Query: 121 AQLGLHQKPCGILNVHHYYDPLIALFDQMAREQFMPDKHRSMVLTDVSPEGMIRQFLNYS 180 QLG H KP G+L V+ +YDPL+ D + E+F+ +HR M+ SPE ++ ++ Sbjct: 123 GQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWT 182 Query: 181 P 181 P Sbjct: 183 P 183 >gb|EAH06105.1| unknown [environmental sequence] Length = 195 Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/188 (50%), Positives = 129/188 (68%) Query: 1 MKSIAVFCGSRDGASPVYKESAHALGKVLAEHGITLIYGGATVGLMGEVADAALEAGGDV 60 ++S+ VFCG+ GASPVY+E+A ALG+ LAE GI LIYGG VGLMG VADAAL AGG+V Sbjct: 3 LRSVCVFCGASPGASPVYREAAEALGQHLAERGIRLIYGGGAVGLMGVVADAALNAGGEV 62 Query: 61 IGVIPHFLKSREIEHKHLTELILVDSMHERKLKMSELAEGFIALPGGPGTMEEYFEIFTW 120 IG+IP L+ EI H++LT L +VD MH RK +M+EL++ FIALPGG GT+EE FE++TW Sbjct: 63 IGIIPQSLERAEIGHRNLTCLEVVDGMHARKARMAELSDAFIALPGGLGTLEELFEVWTW 122 Query: 121 AQLGLHQKPCGILNVHHYYDPLIALFDQMAREQFMPDKHRSMVLTDVSPEGMIRQFLNYS 180 QLG H KP G+L V+ +Y L D + E+F+ +HR M+ P+ ++ + Sbjct: 123 GQLGYHAKPLGLLEVNGFYSKLGDFLDHLVAERFVRPQHREMLQIAGDPQNLLDALSEWR 182 Query: 181 PPPVKTYL 188 P ++ Sbjct: 183 PSAAPKWV 190 >ref|NP_886801.1| putative lysine decarboxylase [Bordetella bronchiseptica RB50] emb|CAE30750.1| putative lysine decarboxylase [Bordetella bronchiseptica] Length = 208 Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 91/189 (48%), Positives = 125/189 (66%) Query: 1 MKSIAVFCGSRDGASPVYKESAHALGKVLAEHGITLIYGGATVGLMGEVADAALEAGGDV 60 +++I V+CGS G P Y E A + L + G+ L+YGGA+VG+MG VAD + GG V Sbjct: 16 IQNICVYCGSNSGRQPEYIEHAQGFARELVKRGLGLVYGGASVGIMGAVADTVMAEGGRV 75 Query: 61 IGVIPHFLKSREIEHKHLTELILVDSMHERKLKMSELAEGFIALPGGPGTMEEYFEIFTW 120 IG+IP L +E+ H+ LTEL +V SMHERK M++ A+GF+ALPGG GT+EE FEI+TW Sbjct: 76 IGIIPEALMKKELAHRGLTELHVVQSMHERKTLMAQKADGFVALPGGAGTLEEIFEIWTW 135 Query: 121 AQLGLHQKPCGILNVHHYYDPLIALFDQMAREQFMPDKHRSMVLTDVSPEGMIRQFLNYS 180 AQLG+HQKPCG+LN+ YYD L + E FM +HR+M+ D P ++ F +Y Sbjct: 136 AQLGMHQKPCGLLNIAGYYDLLGQFLNHTVDEAFMRPQHRAMLAIDHDPAALLDHFASYV 195 Query: 181 PPPVKTYLT 189 P V ++ Sbjct: 196 APTVSKWIA 204 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 305,346,682 Number of extensions: 12349277 Number of successful extensions: 28802 Number of sequences better than 1.0e-05: 244 Number of HSP's gapped: 28795 Number of HSP's successfully gapped: 246 Length of query: 193 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 74 Effective length of database: 434,140,797 Effective search space: 32126418978 Effective search space used: 32126418978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)