BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0010.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulat... 137 2e-31 ref|NP_822628.1| putative beta-xylosidase [Streptomyces avermiti... 113 5e-24 sp|P36906|XYNB_THESA Beta-xylosidase (1,4-beta-D-xylan xylohydro... 103 3e-21 pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From ... 103 3e-21 sp|Q9ZFM2|XYNB_BACST BETA-XYLOSIDASE (1,4-BETA-D-XYLAN XYLOHYDRO... 103 5e-21 >dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family [Aeromonas punctata] Length = 745 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 1/226 (0%) Query: 10 FSEFIDRLKQRLHESRFESLPVYLTEWNSTVSHKDLMSDTCFKSAYIIKNLTENYDRLDA 69 + E I ++Q+++ S + + +++TEWN ++ ++L+ DT F + ++I + + A Sbjct: 496 YKESIALMRQKMNASSYGHVELHVTEWNFSLYDRNLLHDTMFMAPFVIYHTMNTLGDVKA 555 Query: 70 FGYWLLTDLHEENLLPQQLFHGGLGLFTYNNIKKPSYHAFSFLNKLGNERIAGGDGYFIT 129 +W TD+ EE+++P F+GG GL + + KPSY+AF + KLG+E + GDGY T Sbjct: 556 MAFWSFTDVFEESIVPASPFYGGFGLINRDGLNKPSYYAFELMQKLGDELMVKGDGYVGT 615 Query: 130 RSSTG-FQILLHNYHHYDEVYAKGVSISISYHERYSHFPAKSRKEFNFELAPVSGTYDLV 188 R G Q L ++Y H D+++A G +S RY F K K + L+ + G Y Sbjct: 616 RKRDGSMQFLFYHYVHVDQLFASGDWSELSSSTRYDVFEEKGSKAYELTLSNLEGPYKCT 675 Query: 189 EHLVNQQFGSAFDNENNIGGAMEHSADEIHYLRSISVPKLSKSRVH 234 + ++++ GS FD +G + +EI YL S P + + Sbjct: 676 SYQLDREHGSVFDEWTRMGSPYSLTEEEIAYLNGRSGPVMGTEMIR 721 >ref|NP_822628.1| putative beta-xylosidase [Streptomyces avermitilis MA-4680] dbj|BAC69163.1| putative beta-xylosidase [Streptomyces avermitilis MA-4680] Length = 507 Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 14/232 (6%) Query: 2 NLSPVSHSFSEFIDRLKQRLHESRFESLPVYLTEWNSTVSHKDLMSDTCFKSAYIIKNLT 61 L+P +F R +++L +R+ LPV++TE+NS+ + + DT F +AY+ L Sbjct: 243 TLAPARRLLDQFA-RPREQLKGTRYTELPVHITEFNSSYRPDNPIHDTAFHAAYLAPVLA 301 Query: 62 ENYDRLDAFGYWLLTDLHEENLLPQQLFHGGLGLFTYNNIKKPSYHAFSFLNKLGNERIA 121 D D+F YW +D+ EE+ +P LFHGG GL T+ +KKP+YH ++F+ ++G E + Sbjct: 302 AGGDHADSFSYWTFSDMFEESGVPTALFHGGFGLLTHRQVKKPTYHLYAFMARMGEELLE 361 Query: 122 GGDGYFITRSSTGFQILLHNYHHYDEVYAKGVSISISYHERYSHFPAKSRKEFNFELAPV 181 GD + +TR G ++ + + DE G + H P R Sbjct: 362 RGDDHLVTRHPDG-RVTVLAWAPVDET---GRTPGPDRHTLRLSVPVGRRPR-------- 409 Query: 182 SGTYDLVEHLVNQQFGSAFDNENNIGGAMEHSADEIHYLRSISVPKLSKSRV 233 G + V+++ G+A+ ++GG +I L + P S R+ Sbjct: 410 -GAAFVRRSTVDEEHGNAWTAWRHMGGPRSPRPHQIDLLHEAAEPARSHLRL 460 >sp|P36906|XYNB_THESA Beta-xylosidase (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) pir||S41859 xylan 1,4-beta-xylosidase (EC 3.2.1.37) - Thermoanaerobacterium saccharolyticum gb|AAA27369.1| beta-xylosidase Length = 500 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 20/234 (8%) Query: 3 LSPVSHSFSEFIDRLKQRLHESRFESLPVYLTEWNSTVSHKDLMSDTCFKSAYIIKNLTE 62 + P + +EF +++ + S F +LP ++TE+N++ S ++ + DT F +AYI + L+E Sbjct: 246 IMPSEYMLNEF-KTVREIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIARILSE 304 Query: 63 NYDRLDAFGYWLLTDLHEENLLPQQLFHGGLGLFTYNNIKKPSYHAFSFLNKLGNERIAG 122 D +D+F YW +D+ EE +P+ FHGG GL N I KP+++ F F N +G E + Sbjct: 305 GGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLVALNMIPKPTFYTFKFFNAMGEEMLYR 364 Query: 123 GDGYFITRSSTGFQILLHNYHHYDEVYAKGVSISISYHERYSHFPAKSRKEFNFELAPVS 182 + +TR G L+ ++EV K + Y P + R F Sbjct: 365 DEHMLVTRRDDGSVALI----AWNEVMDKTENPDEDYE---VEIPVRFRDVF-------- 409 Query: 183 GTYDLVEHLVNQQFGSAFDNENNIGGAMEHSADEIHYLRSISVPKLSKSRVHAS 236 + L++++ G+ + ++G S ++++ LR ++ P++ S+ A+ Sbjct: 410 ----IKRQLIDEEHGNPWGTWIHMGRPRYPSKEQVNTLREVAKPEIMTSQPVAN 459 >pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase Length = 500 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 20/234 (8%) Query: 3 LSPVSHSFSEFIDRLKQRLHESRFESLPVYLTEWNSTVSHKDLMSDTCFKSAYIIKNLTE 62 + P + +EF +++ + S F +LP ++TE+N++ S ++ + DT F +AYI + L+E Sbjct: 246 IMPSEYMLNEF-KTVREIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIARILSE 304 Query: 63 NYDRLDAFGYWLLTDLHEENLLPQQLFHGGLGLFTYNNIKKPSYHAFSFLNKLGNERIAG 122 D +D+F YW +D+ EE +P+ FHGG GL N I KP+++ F F N +G E + Sbjct: 305 GGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLVALNMIPKPTFYTFKFFNAMGEEMLYR 364 Query: 123 GDGYFITRSSTGFQILLHNYHHYDEVYAKGVSISISYHERYSHFPAKSRKEFNFELAPVS 182 + +TR G L+ ++EV K + Y P + R F Sbjct: 365 DEHMLVTRRDDGSVALI----AWNEVMDKTENPDEDYE---VEIPVRFRDVF-------- 409 Query: 183 GTYDLVEHLVNQQFGSAFDNENNIGGAMEHSADEIHYLRSISVPKLSKSRVHAS 236 + L++++ G+ + ++G S ++++ LR ++ P++ S+ A+ Sbjct: 410 ----IKRQLIDEEHGNPWGTWIHMGRPRYPSKEQVNTLREVAKPEIMTSQPVAN 459 >sp|Q9ZFM2|XYNB_BACST BETA-XYLOSIDASE (1,4-BETA-D-XYLAN XYLOHYDROLASE) (XYLAN 1,4-BETA-XYLOSIDASE) gb|AAC98129.1| beta-xylosidase [Geobacillus stearothermophilus] Length = 504 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%) Query: 1 LNLSPVSHSFSEFIDRLKQRLHESRFESLPVYLTEWNSTVSHKDLMSDTCFKSAYIIKNL 60 L L P +F ++ + +S F LP+++TE+N++ S + + DT +AYI + L Sbjct: 247 LELEPPEDMLEQF-KTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARIL 305 Query: 61 TENYDRLDAFGYWLLTDLHEENLLPQQLFHGGLGLFTYNNIKKPSYHAFSFLNKLGNERI 120 +E D +D+F YW +D+ EE +P+ LFHGG GL ++I KP++HAF+F N LG+E + Sbjct: 306 SEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELL 365 Query: 121 AGGDGYFITRSSTG-FQILLHNYHHYDEVYAKGVSISISYHERYSHFPAKSRKEFNFELA 179 +TR G +L N V KG ++ KE + Sbjct: 366 YRDGEMIVTRRKDGSIAAVLWNL-----VMEKGEGLT---------------KEVQL-VI 404 Query: 180 PVSGTYDLVE-HLVNQQFGSAFDNENNIGGAMEHSADEIHYLRSISVPKLSKSRVHASGA 238 PVS + ++ +VN+Q+G+A+ +G S + L S +++ R G Sbjct: 405 PVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLPSAQPHVMTEQRRATDGV 464 Query: 239 L 239 + Sbjct: 465 I 465 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 387,435,930 Number of extensions: 16689206 Number of successful extensions: 33897 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 33893 Number of HSP's successfully gapped: 21 Length of query: 261 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 138 Effective length of database: 423,280,401 Effective search space: 58412695338 Effective search space used: 58412695338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)