BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0009.p (571 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulat... 209 2e-52 sp|Q9ZFM2|XYNB_BACST BETA-XYLOSIDASE (1,4-BETA-D-XYLAN XYLOHYDRO... 167 5e-40 ref|NP_822628.1| putative beta-xylosidase [Streptomyces avermiti... 155 2e-36 pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From ... 149 2e-34 sp|P36906|XYNB_THESA Beta-xylosidase (1,4-beta-D-xylan xylohydro... 149 2e-34 >dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family [Aeromonas punctata] Length = 745 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 120/378 (31%), Positives = 201/378 (53%), Gaps = 12/378 (3%) Query: 170 RLSRILDYVNSKYSDPISLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVND 229 RL+R+L Y++ Y++ I+LQ+MA +E+LS+ Y S +F +G+ F YL IRL A Sbjct: 81 RLNRVLTYIDLHYNEKITLQDMAHSEHLSLHYFSHFFTDKIGIPFQKYLTLIRLEKAQAQ 140 Query: 230 LLNESLTIDKVAAQNGFPNVRSFVVAFTEKYGELPSVWRRKHAGEMLGSIEATKE----- 284 L I ++A GF NV+ F F EKYG P +R L + ++ Sbjct: 141 LAANDKNISEIALDCGFANVKLFNKYFKEKYGCTPGSYREASRTPELHQLNVNRKPKTYE 200 Query: 285 --KSVNYYQDEPLSYYEDITAFIESNLESA--PVDLPQRIGSSRTSLIKVPAAGSGQGLR 340 S +YY+ E L+ + +++ +++ + +P S +T I++ A + Sbjct: 201 ESSSGDYYEMETLNAIGSLYRYLDVKVDAVQDTLSVPSAHLSDQTC-IEIRADQTSSVYE 259 Query: 341 HHFKNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYN 400 H+ + RA E L D ++ L + ++ F+ I+ H + +D+MMVY+E+ + P+YN Sbjct: 260 KHWNMTMTAGRAIEGLREDWRKQLSALKGKVPFQNIRFHGIFNDEMMVYSENEQDIPLYN 319 Query: 401 FQFIERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRAL 460 + ++++++DFLL ++P V+ SFMP +LA + E T+F+ N SPP KW L+ Sbjct: 320 WSYVDKLYDFLLDQGVRPFVELSFMPSQLARSKE-TLFWWRGNISPPSDPAKWQALVGEF 378 Query: 461 TQHLIQRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLYQNTYTTVKQIDSAIPFG 520 +H + RYG EEVR W F VWNEP + + + S ++ F Y++T +K I + G Sbjct: 379 VRHCLNRYGAEEVRQWYFEVWNEPDLAGVCWAGSKEEYFT-FYESTVHAIKSILPELKVG 437 Query: 521 GPAAFSTYNKNEDWLFQF 538 GPA N+ W +F Sbjct: 438 GPAMGYGSLWNDTWAEEF 455 >sp|Q9ZFM2|XYNB_BACST BETA-XYLOSIDASE (1,4-BETA-D-XYLAN XYLOHYDROLASE) (XYLAN 1,4-BETA-XYLOSIDASE) gb|AAC98129.1| beta-xylosidase [Geobacillus stearothermophilus] Length = 504 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 9/224 (4%) Query: 327 LIKVPAAGSGQGLRHHFKNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDM 386 ++ VP+ G + + ++K +G R L + L++ Q +IGF+YI+ H LL DD+ Sbjct: 3 VVNVPSNGR-EKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDV 61 Query: 387 MVYNE---DAEGKPVYNFQFIERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHIN 443 +Y E D E KP YNF +I+R+ D L++ ++P ++F FMPK LAS ++TVFY N Sbjct: 62 GIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASG-DQTVFYWKGN 120 Query: 444 TSPPKSIDKWNGLIRALTQHLIQRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLY 503 +PPK +KW LI A+ H I+RYG+EEVR+WLF VWNEP+ N + + F +LY Sbjct: 121 VTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYF-KLY 179 Query: 504 QNTYTTVKQIDSAIPFGGPAAFSTYNKNEDWLFQFXXXXAESKA 547 + T VK +D + GGPA +++W+ F AE + Sbjct: 180 EVTARAVKSVDPHLQVGGPA---ICGGSDEWITDFLHFCAERRV 220 >ref|NP_822628.1| putative beta-xylosidase [Streptomyces avermitilis MA-4680] dbj|BAC69163.1| putative beta-xylosidase [Streptomyces avermitilis MA-4680] Length = 507 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 131/215 (60%), Gaps = 9/215 (4%) Query: 327 LIKVPAAGSGQGLRHHFKNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDM 386 +I VPA +G+ L ++ +G R + L D Q +L + Q EIGF+YI+ H LL D M Sbjct: 1 MISVPAEATGR-LSDAWRACVGTGRIELALRRDYQDSLALLQREIGFRYIRGHGLLSDGM 59 Query: 387 MVYNEDA-EG--KPVYNFQFIERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHIN 443 VY A EG + ++F ++++V D L + ++P ++ FMP +LAS ++TVF+ N Sbjct: 60 GVYRPYAYEGARRVHHSFTYVDQVVDAYLGLHVRPFLELGFMPTELASG-DQTVFWWRGN 118 Query: 444 TSPPKSIDKWNGLIRALTQHLIQRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLY 503 +PP+S D+W L+RA HL+ RYG+EEVR+W VWNEP+ ++ G + +++LY Sbjct: 119 VTPPRSYDEWARLVRATLTHLVDRYGIEEVRTWPIEVWNEPNLTDFWQGADEAE-YHRLY 177 Query: 504 QNTYTTVKQIDSAIPFGGPAAFSTYNKNEDWLFQF 538 + T TVK +D+++ GGPA ++WL +F Sbjct: 178 EVTARTVKDVDASLQVGGPA---ISPGADEWLLRF 209 >pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase Length = 500 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 114/199 (57%), Gaps = 6/199 (3%) Query: 328 IKVPAAGSGQGLRHHFKNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDMM 387 ++VP S + ++ +G R L + + L+ + I FKYI+ H LL DD+ Sbjct: 4 VRVPDF-SDKKFSDRWRYCVGTGRLGLALQKEYIETLKYVKENIDFKYIRGHGLLCDDVG 62 Query: 388 VYNEDAEG---KPVYNFQFIERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHINT 444 +Y ED G KP YNF +I+R+FD L I ++P V+ FMPKKLAS + TVFY N Sbjct: 63 IYREDVVGDEVKPFYNFTYIDRIFDSFLEIGIRPFVEIGFMPKKLASGTQ-TVFYWEGNV 121 Query: 445 SPPKSIDKWNGLIRALTQHLIQRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLYQ 504 +PPK +KW+ L++A+ H I RYG+EEV W F +WNEP+ + F +LY+ Sbjct: 122 TPPKDYEKWSDLVKAVLHHFISRYGIEEVLKWPFEIWNEPNLKEFWKDADEKEYF-KLYK 180 Query: 505 NTYTTVKQIDSAIPFGGPA 523 T +K+++ + GGPA Sbjct: 181 VTAKAIKEVNENLKVGGPA 199 >sp|P36906|XYNB_THESA Beta-xylosidase (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) pir||S41859 xylan 1,4-beta-xylosidase (EC 3.2.1.37) - Thermoanaerobacterium saccharolyticum gb|AAA27369.1| beta-xylosidase Length = 500 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 114/199 (57%), Gaps = 6/199 (3%) Query: 328 IKVPAAGSGQGLRHHFKNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDMM 387 ++VP S + ++ +G R L + + L+ + I FKYI+ H LL DD+ Sbjct: 4 VRVPDF-SDKKFSDRWRYCVGTGRLGLALQKEYIETLKYVKENIDFKYIRGHGLLCDDVG 62 Query: 388 VYNEDAEG---KPVYNFQFIERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHINT 444 +Y ED G KP YNF +I+R+FD L I ++P V+ FMPKKLAS + TVFY N Sbjct: 63 IYREDVVGDEVKPFYNFTYIDRIFDSFLEIGIRPFVEIGFMPKKLASGTQ-TVFYWEGNV 121 Query: 445 SPPKSIDKWNGLIRALTQHLIQRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLYQ 504 +PPK +KW+ L++A+ H I RYG+EEV W F +WNEP+ + F +LY+ Sbjct: 122 TPPKDYEKWSDLVKAVLHHFISRYGIEEVLKWPFEIWNEPNLKEFWKDADEKEYF-KLYK 180 Query: 505 NTYTTVKQIDSAIPFGGPA 523 T +K+++ + GGPA Sbjct: 181 VTAKAIKEVNENLKVGGPA 199 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 809,450,961 Number of extensions: 34409898 Number of successful extensions: 94913 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 94999 Number of HSP's successfully gapped: 166 Length of query: 571 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 440 Effective length of database: 401,559,609 Effective search space: 176686227960 Effective search space used: 176686227960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)