BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0261.0008.p (126 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242125.1| BH1259~unknown conserved protein [Bacillus halo... 186 1e-46 ref|NP_658427.1| UPF0074, Uncharacterized protein family UPF0074... 181 4e-45 ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus ihe... 176 2e-43 ref|NP_470886.1| similar to unknown protein [Listeria innocua] >... 156 1e-37 ref|NP_465040.1| similar to unknown protein [Listeria monocytoge... 155 3e-37 >ref|NP_242125.1| BH1259~unknown conserved protein [Bacillus halodurans] pir||C83807 hypothetical protein BH1259 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04978.1| BH1259~unknown conserved protein [Bacillus halodurans] Length = 139 Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 88/126 (69%), Positives = 108/126 (85%) Query: 1 MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60 MM LA K GEGP SLKSIA+++ LSEHYLEQLIAPLRNA LVKS+RGAYGGY+L++EA Sbjct: 14 MMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRGAYGGYMLAKEASE 73 Query: 61 ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120 ITAGDIIRVLEGPISPV+ E ++PAKRDLW++IRD++ +VLDSTTL DL N++++ + Sbjct: 74 ITAGDIIRVLEGPISPVEVMENEEPAKRDLWIKIRDAVKEVLDSTTLEDLANYEDKGDQE 133 Query: 121 NYMFYI 126 YMFYI Sbjct: 134 YYMFYI 139 >ref|NP_658427.1| UPF0074, Uncharacterized protein family UPF0074 [Bacillus anthracis A2012] ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579] ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames] ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987] gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579] gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames] gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987] Length = 138 Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 85/126 (67%), Positives = 106/126 (84%), Gaps = 1/126 (0%) Query: 1 MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60 M++LA KFGEGP SLKSIA+ + LSEHYLEQLI+PLRNA LVKS RGAYGGY+LS + Sbjct: 14 MIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRGAYGGYVLSDQPAN 73 Query: 61 ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120 ITAGD+IRVLEGPIS V+ EE++PA+R LW+R+RD++ +VLDSTTL DL+ ++EE+H Sbjct: 74 ITAGDVIRVLEGPISVVEMIEEEEPAQRQLWMRVRDAVQEVLDSTTLEDLVRYEEENHG- 132 Query: 121 NYMFYI 126 YMFYI Sbjct: 133 GYMFYI 138 >ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831] dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 139 Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 81/126 (64%), Positives = 104/126 (82%) Query: 1 MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60 M+ELAL +G+GPTSLK IA++N LSEHYLEQL +PLRNAGLVKS+RGAYGGY+LSRE + Sbjct: 14 MIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRGAYGGYMLSREPKS 73 Query: 61 ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120 ITA D++RVLEGP++ V+ EE+ PA++ LWL IRD++ DVLD TTL DL++ + + D Sbjct: 74 ITASDVLRVLEGPLTIVEGMEEEKPAQQSLWLSIRDAVKDVLDQTTLQDLVDHENDEPRD 133 Query: 121 NYMFYI 126 YMFYI Sbjct: 134 AYMFYI 139 >ref|NP_470886.1| similar to unknown protein [Listeria innocua] pir||AE1626 hypothetical protein homolog lin1550 [imported] - Listeria innocua (strain Clip11262) emb|CAC96781.1| lin1550 [Listeria innocua] Length = 140 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/126 (60%), Positives = 98/126 (77%), Gaps = 1/126 (0%) Query: 2 MELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGTI 61 +ELA + G+GP SL+SIA+ LSEHYLEQLI PLRNAG+VKSIRGA+GGY+L+ + I Sbjct: 15 LELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKI 74 Query: 62 TAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESH-AD 120 TAGDIIR LEGPI V+ E+++ A+R+LW R+R+++ DVLD TTLSDL+ +S D Sbjct: 75 TAGDIIRTLEGPIVLVESMEDEEAAQRELWTRMRNAVRDVLDQTTLSDLLKHSTDSELTD 134 Query: 121 NYMFYI 126 YMFYI Sbjct: 135 GYMFYI 140 >ref|NP_465040.1| similar to unknown protein [Listeria monocytogenes EGD-e] pir||AC1264 hypothetical protein lmo1515 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99593.1| lmo1515 [Listeria monocytogenes] Length = 140 Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/126 (59%), Positives = 98/126 (77%), Gaps = 1/126 (0%) Query: 2 MELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGTI 61 +ELA + G+GP SL+SIA+ LSEHYLEQLI PLRNAG+VKSIRGA+GGY+L+ + I Sbjct: 15 LELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKI 74 Query: 62 TAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESH-AD 120 TAGDIIR LEGPI V+ E+++ A+R+LW R+R+++ DVLD TTL+DL+ +S D Sbjct: 75 TAGDIIRTLEGPIVLVESMEDEEAAQRELWTRMRNAVRDVLDQTTLADLLKHSTDSELTD 134 Query: 121 NYMFYI 126 YMFYI Sbjct: 135 GYMFYI 140 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 187,894,013 Number of extensions: 7131507 Number of successful extensions: 20755 Number of sequences better than 1.0e-05: 336 Number of HSP's gapped: 20660 Number of HSP's successfully gapped: 336 Length of query: 126 Length of database: 757,237,578 Length adjustment: 89 Effective length of query: 37 Effective length of database: 515,593,767 Effective search space: 19076969379 Effective search space used: 19076969379 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)