BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0261.0004.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00097585.1| COG2256: ATPase related to the helicase subun... 435 e-120 ref|NP_925055.1| hypothetical protein glr2109 [Gloeobacter viola... 402 e-111 ref|ZP_00158298.1| hypothetical protein Avar502001 [Anabaena var... 397 e-109 gb|EAK11708.1| unknown [environmental sequence] 391 e-107 ref|NP_970633.1| ATPase, AAA family [Treponema denticola ATCC 35... 389 e-107 >ref|ZP_00097585.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Desulfitobacterium hafniense] Length = 424 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/417 (53%), Positives = 296/417 (70%), Gaps = 6/417 (1%) Query: 1 MDLFSFGEDTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPG 60 MDLFS + LA+RMRP LD+YIGQ I+G GKLLRRAIEAD+V+S++LYGPPG Sbjct: 1 MDLFSASFNPHQIAPLAERMRPRTLDDYIGQSEIIGKGKLLRRAIEADRVTSLILYGPPG 60 Query: 61 CGKTTLAHIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFN 120 GKT+LA +I++ T FVR+NAV A VK++RE+I+ A LYG KT++F DEVHRFN Sbjct: 61 TGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFN 120 Query: 121 SSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALA 180 +QDALLPAVE GTI FIGATTENPF +N AL+SR+TLF+L+ LT+E + +ALA Sbjct: 121 KGQQDALLPAVENGTITFIGATTENPFFELNSALLSRATLFRLQPLTAEDIRSGLAQALA 180 Query: 181 DEKRGLGFMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEE 240 D++RGLG + D EA +H + ANGD+RRALNALELA +TT PE G ITL+VAEE Sbjct: 181 DKERGLGNYSVSIDPEAWEHWLNFANGDLRRALNALELAVLTTPPE-QGVRRITLSVAEE 239 Query: 241 SIRRPIVKADES--TQYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAA 297 SI++ ++ D++ YD++SAF KS+RGS DAAL+W +E G DP +RR+I Sbjct: 240 SIQQRAMRFDKNGDNHYDIVSAFIKSMRGSDPDAALYWLAVLLES-GEDPRFIVRRIIVH 298 Query: 298 SSEDIGLANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMD 357 +SED+GLA+P M+QA +A A G PEA++ IAQA+L +PKSN+ +MAI RA Sbjct: 299 ASEDVGLADPMVMLQAHAAANALEWVGLPEARIPIAQAVLAIATAPKSNSTIMAIDRATG 358 Query: 358 SIEELKSAEVPLHLRDTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFY 413 + + +VP HLRD +Y G+ +GH + Y YPH++PGH+V+Q YLP+ + +R Y Sbjct: 359 YVRSHPTGQVPAHLRDANYPGAKKMGHGKNYLYPHDYPGHWVEQGYLPQEVRKRILY 415 >ref|NP_925055.1| hypothetical protein glr2109 [Gloeobacter violaceus] dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421] Length = 747 Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/424 (50%), Positives = 289/424 (68%), Gaps = 13/424 (3%) Query: 16 LADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGCGKTTLAHIISHHTQ 75 LADRMRP +LD+++GQ HIVGPG+LLRRAI+ADQ+SS++ YGPPG GKTTLA II+ T+ Sbjct: 31 LADRMRPRSLDQFVGQGHIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTTLARIIAGTTR 90 Query: 76 GEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNSSRQDALLPAVEKGT 135 F+ +NAV A VKD+RE I+ A+S + +G +TILF+DEVHRFN S+QDALLP +E GT Sbjct: 91 AHFIAINAVLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIENGT 150 Query: 136 IIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALADEKRGLGFMQLQADE 195 I+ +GATTENPF VN AL+SRS LFQL+ L SE +ALAD +RG G ++ D Sbjct: 151 IVLVGATTENPFFEVNKALVSRSRLFQLKLLESEDLRAVALQALADTERGYGKRNVRLDP 210 Query: 196 EALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEESIRRPIVKADE--ST 253 EAL H+ D+A GD R LNALELA TT + DG++ ITL VAEESI+R V D+ Sbjct: 211 EALAHLVDVAGGDARTLLNALELAVETTPADGDGAIRITLPVAEESIQRRAVLYDKEGDV 270 Query: 254 QYDVLSAFHKSIRGSS-DAALFWF---LYAVEKLGMDPMTFIRRLIAASSEDIGLANPQA 309 +D +SA+ KS+RGS DAAL+W +YA G +P RRL+ +SED+GLA+PQA Sbjct: 271 HFDTISAYIKSLRGSDPDAALYWLARMIYA----GEEPRFIFRRLLIQASEDVGLADPQA 326 Query: 310 MVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSIEELKSAEVPL 369 + V+ EA+ G PE + ++AQA L+ +PKSN+ MA A+ ++E +++++P Sbjct: 327 LAVVVACAEAFDRVGMPEGRYHLAQATLYLATAPKSNS-AMAFFDALAAVEGERASDIPN 385 Query: 370 HLRDTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQGNEAKIRHNQ 428 L+D + + GH GY YPH + H+V Q+YLP ++ + FYQ +QG EA I+ Sbjct: 386 PLKDAN-RDKEGFGHGAGYLYPHAYRDHWVAQQYLPTSLQGQLFYQPGDQGYEAGIQAAV 444 Query: 429 GLRR 432 RR Sbjct: 445 ARRR 448 >ref|ZP_00158298.1| hypothetical protein Avar502001 [Anabaena variabilis ATCC 29413] Length = 739 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/421 (48%), Positives = 284/421 (67%), Gaps = 7/421 (1%) Query: 16 LADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGCGKTTLAHIISHHTQ 75 LA RMRP LDE++GQ+HI+GPG+LLRRAI DQ+SS++ YGPPG GKTTLA +I++ T+ Sbjct: 18 LAARMRPRTLDEFVGQDHIIGPGRLLRRAISLDQLSSLIFYGPPGTGKTTLARVIANTTR 77 Query: 76 GEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNSSRQDALLPAVEKGT 135 F+ +NAV + VK++R I+ AQ + + +TILF+DEVHRFN S+QDALLP VE GT Sbjct: 78 AHFLAINAVLSGVKEIRAAIDTAQEQRKFHNQRTILFVDEVHRFNKSQQDALLPWVENGT 137 Query: 136 IIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALADEKRGLGFMQLQADE 195 +I IGATTENP+ VN AL+SRS +FQL++L E + + L DE+RG G ++++ D+ Sbjct: 138 VILIGATTENPYFEVNKALVSRSRIFQLKALNDEDLYKVVEQTLTDEQRGYGCLKVKIDD 197 Query: 196 EALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEESIRRPIVKADE--ST 253 EAL+H+ ++ANGD R LNALELA TT P+ G VHI LAVAEESI++ V D+ Sbjct: 198 EALKHLVNVANGDARSLLNALELAVETTPPDETGVVHINLAVAEESIQQRAVLYDKEGDV 257 Query: 254 QYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAASSEDIGLANPQAMVQ 312 +D +SAF KS+RGS DAAL+W V G DP RR++ +SED+GLA+P A+V Sbjct: 258 HFDTVSAFIKSLRGSDPDAALYWLAKMVYA-GEDPRFIFRRMLILASEDVGLADPNAVVV 316 Query: 313 AVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSIEELKSAEVPLHLR 372 + EA+ G PE + ++AQA L+ + KSN+ VM A+ +IE+ K AEVP +L+ Sbjct: 317 VNACNEAFDRVGMPEGRYHLAQAALYLATAAKSNS-VMEFFDALAAIEQEKEAEVPNNLK 375 Query: 373 DTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQGNEAKIRHNQGLR 431 D + + GH GY YP+ + H+V Q+YLP + + FYQ + QG E +I R Sbjct: 376 DAN-RDKKGFGHGAGYLYPYAYRDHWVAQQYLPATLQGQVFYQPSLQGRERQISTEVSRR 434 Query: 432 R 432 R Sbjct: 435 R 435 >gb|EAK11708.1| unknown [environmental sequence] Length = 538 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/416 (48%), Positives = 278/416 (66%), Gaps = 7/416 (1%) Query: 16 LADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGCGKTTLAHIISHHTQ 75 LADRMRP ++E++GQ HI+ PG+LLRR+I+ADQ+SS++ YGPPG GKTTLA II++ T+ Sbjct: 19 LADRMRPRTIEEFVGQSHILAPGRLLRRSIQADQLSSLIFYGPPGTGKTTLARIIANTTK 78 Query: 76 GEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNSSRQDALLPAVEKGT 135 EF+ +NAV + V D+R IE A+ ++ + +++LF+DEVHRFN ++QDA+LP VE GT Sbjct: 79 AEFLSINAVLSGVGDIRNCIENARKIRTEHQRRSVLFVDEVHRFNKAQQDAMLPHVENGT 138 Query: 136 IIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALADEKRGLGFMQLQADE 195 +I IGATTENP+ VN +L+SRS +FQL++LT + AL D +RG G + E Sbjct: 139 VILIGATTENPYFEVNKSLVSRSRIFQLQTLTKSEVEKILENALEDNERGFGNKNVDLLE 198 Query: 196 EALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEESI--RRPIVKADEST 253 EA H+A++A GD R ALNALELA +T+ P DG + ITL +AEESI R + D Sbjct: 199 EARSHLANVAGGDARAALNALELAVLTSKPGSDGKLRITLDIAEESIQQRAILYDKDGDA 258 Query: 254 QYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAASSEDIGLANPQAMVQ 312 +D +SAF KS+RGS DAALFW VE G DP RR++ +SED+G+A+PQA+ Sbjct: 259 HFDTISAFIKSMRGSDPDAALFWMAKMVEA-GEDPRFIFRRMLIFASEDVGMADPQALSV 317 Query: 313 AVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSIEELKSAEVPLHLR 372 SA A+ G PE + +++QA L+ +PKSN+ A A+ S+ E +S E+P ++ Sbjct: 318 VASAAHAFDYVGMPEGRFHLSQACLYLSTAPKSNS-AFAFFDAISSVREEQSGEIPDSIK 376 Query: 373 DTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQGNEAKIRHN 427 D + GH EGY YPH + H+V Q+YLP + R FYQ +EQG EA +R N Sbjct: 377 DAS-RDKDGFGHGEGYLYPHAYRDHWVAQQYLPDLLQGRIFYQPSEQGYEATVREN 431 >ref|NP_970633.1| ATPase, AAA family [Treponema denticola ATCC 35405] gb|AAS10514.1| ATPase, AAA family [Treponema denticola ATCC 35405] Length = 441 Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/418 (49%), Positives = 283/418 (67%), Gaps = 12/418 (2%) Query: 16 LADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGCGKTTLAHIISHHTQ 75 LA RMRP +LDEYIGQEHI+G G LLRRAI+AD++SS++ +GPPG GKTTLA +I++ T+ Sbjct: 19 LASRMRPISLDEYIGQEHIIGKGCLLRRAIQADRLSSLIFFGPPGTGKTTLARVIANTTK 78 Query: 76 GEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNSSRQDALLPAVEKGT 135 F+ LNAV A V+ +RE + A+ NK LY KTILF+DEVHR+N S+QDALLP VE GT Sbjct: 79 SNFLSLNAVLAGVQQIREAVTNAEENKKLYNRKTILFVDEVHRWNKSQQDALLPWVENGT 138 Query: 136 IIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALADEKRGLGFMQLQADE 195 II IGATTENP+ VN AL+SRS +F+L+ LT + AL +++RG G +++ + Sbjct: 139 IILIGATTENPYFEVNKALVSRSRVFELKPLTDNDLKKVAQFALTNKERGYGNWKIEFEA 198 Query: 196 EALQHIADMANGDIRRALNALELAAMTTA----PEPDGSVHITLAVAEESIRRPIV--KA 249 AL+H+ D A+GD R LNALELA T+A PE + + I+L AEESI++ +V Sbjct: 199 GALEHLIDTASGDARSLLNALELAVETSAEHWPPEENFKITISLKAAEESIQKKVVLYDR 258 Query: 250 DESTQYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAASSEDIGLANPQ 308 D YDV+SAF KSIRGS DAA++W + G DP RR++ ++ EDIGLA+P Sbjct: 259 DGDYHYDVISAFIKSIRGSDPDAAVYWLARMIAA-GEDPRFIFRRMLISACEDIGLASPG 317 Query: 309 AMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSIEELKSAEVP 368 A+ A EA+ G PE + ++A A L+ PKSN+ A +A+D +++ ++ EVP Sbjct: 318 AVSVVAGAAEAFDRVGMPEGRYHLAHAALYLATCPKSNS-AEAFFKALDCVQK-ENKEVP 375 Query: 369 LHLRDTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQGNEAKIR 425 HL+D++ G ALGH EGY YPH F GH+VKQ+YLP + FY+ + QG E KI+ Sbjct: 376 NHLKDSNRDGE-ALGHGEGYLYPHAFEGHWVKQQYLPDGLEGTHFYEPSNQGYEGKIK 432 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 587,801,627 Number of extensions: 22549463 Number of successful extensions: 99186 Number of sequences better than 1.0e-05: 896 Number of HSP's gapped: 98580 Number of HSP's successfully gapped: 898 Length of query: 434 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 305 Effective length of database: 406,989,807 Effective search space: 124131891135 Effective search space used: 124131891135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)