BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0261.0003.p
         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_561654.1| hypothetical protein [Clostridium perfringens] ...    95   5e-19
ref|NP_655703.1| hypothetical protein predicted by GeneMark [Bac...    82   3e-15
ref|NP_844256.1| conserved hypothetical protein [Bacillus anthra...    82   3e-15
ref|NP_978241.1| conserved hypothetical protein [Bacillus cereus...    81   9e-15
ref|NP_831544.1| hypothetical protein [Bacillus cereus ATCC 1457...    79   4e-14

>ref|NP_561654.1| hypothetical protein [Clostridium perfringens]
 dbj|BAB80444.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 92

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  +DVLP  ++E LQ Y+ G+ LYIP+K E +  WGENSG R+ + +RN EIF  +
Sbjct: 1  MKYVKAQDVLPEEIIEILQKYVDGKYLYIPRKNENQKAWGENSGIRKSLNARNTEIFKKY 60

Query: 61 SSGCSVNELQKRYHLSEESIRKIIS 85
            G S+N L K Y LSE+SIR+IIS
Sbjct: 61 KDGTSINTLAKEYFLSEKSIRRIIS 85


>ref|NP_655703.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
          Length = 87

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  K VLP  L+ E+Q YIQGE +YIPK+  +  KWG  SG R+++  RN+ I  + 
Sbjct: 1  MKYVKAKAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDXRNKAIKDAF 60

Query: 61 SSGCSVNELQKRYHLSEESIRKII 84
           SG S+++L + Y LS E+I+KI+
Sbjct: 61 KSGISIHQLAEEYFLSGETIKKIV 84


>ref|NP_844256.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25742.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 87

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  K VLP  L+ E+Q YIQGE +YIPK+  +  KWG  SG R+++  RN+ I  + 
Sbjct: 1  MKYVKAKAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNKAIKDAF 60

Query: 61 SSGCSVNELQKRYHLSEESIRKII 84
           SG S+++L + Y LS E+I+KI+
Sbjct: 61 KSGISIHQLAEEYFLSGETIKKIV 84


>ref|NP_978241.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40849.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 87

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV    VLP  L+ E+Q YIQGE +YIPK+  +R KWG  SG R+++  RN+ I  + 
Sbjct: 1  MKYVKAATVLPESLIVEIQKYIQGETIYIPKQETKRYKWGTRSGGRKQLDERNKAIKEAF 60

Query: 61 SSGCSVNELQKRYHLSEESIRKII 84
           SG ++++L + Y LS E+I+KI+
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIV 84


>ref|NP_831544.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP08745.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 87

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV    VLP  L+ E+Q YIQGE +YIPK+  +  KWG  SG R+++  RN+ I  + 
Sbjct: 1  MKYVKANAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNKAIKEAF 60

Query: 61 SSGCSVNELQKRYHLSEESIRKII 84
           SG ++++L + Y LS E+I+KI+
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIV 84


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 135,108,198
Number of extensions: 4781395
Number of successful extensions: 9124
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9124
Number of HSP's successfully gapped: 7
Length of query: 93
Length of database: 757,237,578
Length adjustment: 61
Effective length of query: 32
Effective length of database: 591,616,539
Effective search space: 18931729248
Effective search space used: 18931729248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)