BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0020.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_721820.1| conserved hypothetical protein [Streptococcus m... 189 5e-47 ref|NP_786380.1| unknown [Lactobacillus plantarum WCFS1] >gi|282... 174 1e-42 ref|NP_603015.1| Hypothetical cytosolic protein [Fusobacterium n... 164 1e-39 ref|NP_471522.1| lin2189 [Listeria innocua] >gi|25373958|pir||AB... 136 3e-31 ref|NP_465607.1| lmo2083 [Listeria monocytogenes EGD-e] >gi|2537... 135 5e-31 >ref|NP_721820.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN59126.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 210 Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 137/211 (64%), Gaps = 5/211 (2%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MK+EW+K +K +Y A+P+ + V + ++G GNPN ++F+ V LY+L Y IKM Sbjct: 1 MKHEWRKFEKELYGVKAKPIFLEVEEQRFITIKGKGNPNDQDFSNRVSALYALAYGIKMA 60 Query: 61 PKKGPAPE----GYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLA 116 K+ E +++++PLEG+W ++ + + L+K++L YTIMIRQPEF+T +L Sbjct: 61 YKQAMKTEQDDRAVTDFAVYPLEGLWQQAKDAK-EDTLEKDKLSYTIMIRQPEFITKELV 119 Query: 117 GSIMEKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRL 176 +++V+ KP+ + F S +DG +Q+LH G YD+EP SF KM+ + EHGL+R Sbjct: 120 DQALDRVKIKKPNSFYESISFESIKDGKCIQVLHIGSYDDEPQSFAKMDAFAKEHGLKRS 179 Query: 177 SKTHREIYLTDARRTQPEKQKTVLRFLVAEE 207 S HREIYL++A+RT+ K KT+LR+ V E+ Sbjct: 180 SDIHREIYLSNAQRTEKSKLKTILRYQVEEK 210 >ref|NP_786380.1| unknown [Lactobacillus plantarum WCFS1] emb|CAD65242.1| unknown [Lactobacillus plantarum WCFS1] Length = 210 Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 124/208 (59%), Gaps = 5/208 (2%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MKYEW+KQ+K Y +P L+T+PA + + GTGNPN EF + LY Y +K Sbjct: 3 MKYEWRKQEKTTYATKKQPQLLTIPAQTFMSIHGTGNPNGPEFQTHLQTLYPAAYGLKHA 62 Query: 61 PKKGPAPEG--YHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGS 118 K+ + + +Y +FPLEGVW L+ KG+ LDK+E Y IMIR P+FV +L Sbjct: 63 YKQYAQTQACEFDDYVVFPLEGVWSLTIKGQQLDHLDKDEFSYDIMIRVPDFVPNELIAP 122 Query: 119 IMEKVQRTKPHPLLQKAVFGSSEDGPSV-QMLHTGPYDEEPASFRKMEQYCAEHGLRRLS 177 + V+ K P Q V D V Q+LH G YD+EPASF K+++ A G+ R S Sbjct: 123 ALAAVKAKKQLPTEQINV--QQFDAMQVAQILHLGAYDDEPASFAKIDELVANQGMHRTS 180 Query: 178 KTHREIYLTDARRTQPEKQKTVLRFLVA 205 K HREIYL+DARR P+K KT+LR+ VA Sbjct: 181 KIHREIYLSDARRVAPDKLKTILRYRVA 208 >ref|NP_603015.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94314.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 204 Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 7/196 (3%) Query: 12 IYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKMLPKKGPAPEG-- 69 IY + ++ +P + M+ G GNPN F+ V VLYSL Y+IKML K E Sbjct: 12 IYGTKEKAEILKIPKQQFIMIDGIGNPNETNFSNKVSVLYSLAYSIKMLYKNMMKEEKDT 71 Query: 70 -YHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIMEKVQRTKP 128 ++ ++PLEGVW K + LDKN+L YTIMI+QP+F+T +E V++ KP Sbjct: 72 KIKDFIVYPLEGVW----KKLEEEKLDKNKLKYTIMIKQPDFITQKNFNDALEVVKKRKP 127 Query: 129 HPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKTHREIYLTDA 188 L + F S E+G S+Q+LH G YD EP SF KME+ + L R+S HREIYL + Sbjct: 128 SILYDEIYFNSLEEGKSIQILHVGSYDNEPISFGKMEELMNKLNLVRVSDYHREIYLNNK 187 Query: 189 RRTQPEKQKTVLRFLV 204 RT +K KT+LR+ + Sbjct: 188 NRTSTDKLKTILRYSI 203 >ref|NP_471522.1| lin2189 [Listeria innocua] pir||AB1706 hypothetical protein lin2189 [imported] - Listeria innocua (strain Clip11262) emb|CAC97418.1| lin2189 [Listeria innocua] Length = 208 Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 2 KYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKMLP 61 K ++KK++K Y P +P I VP N+ M+ G G+P+ EE+ +AV LY++ Y IKM Sbjct: 5 KIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSK 64 Query: 62 KKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIME 121 +GY ++ + PLEG W +G+ D++ ++T ++RQP+FVT ++ E Sbjct: 65 MGETRLDGYSDFVVPPLEGFW--WSEGKFDLK-DRDAWLWTSILRQPDFVTEEVLEWAKE 121 Query: 122 KVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLS---K 178 ++ KP + E+G VQM+H GP+ EE + +M Q+ GLR + + Sbjct: 122 VARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFSEEVHTVAEMHQFMETEGLRNDTGAIR 181 Query: 179 THREIYLTDARRTQPEKQKTVLRFLVA 205 H EIYL+D R+ PEK KT+LR V+ Sbjct: 182 KHHEIYLSDPRKANPEKMKTILRLPVS 208 >ref|NP_465607.1| lmo2083 [Listeria monocytogenes EGD-e] pir||AC1335 hypothetical protein lmo2083 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00161.1| lmo2083 [Listeria monocytogenes] Length = 208 Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 2 KYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKMLP 61 K ++KK++K Y P +P I VP N+ M+ G G+P+ EE+ +AV LY++ Y IKM Sbjct: 5 KIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSK 64 Query: 62 KKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIME 121 GY ++ + PLEG W EK + D++ ++T ++RQP+FVT ++ E Sbjct: 65 MGETRLNGYADFVVPPLEGFWWSEEKFDLK---DRDAWLWTSILRQPDFVTEEVLEWAKE 121 Query: 122 KVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLS---K 178 Q+ KP + E+G VQM+H GP+ EE + ++ Q+ GL + + Sbjct: 122 VAQKKKPDVDTSRVKLVRFEEGECVQMMHIGPFSEEVKTVAELHQFMETEGLHNDTGAVR 181 Query: 179 THREIYLTDARRTQPEKQKTVLRFLVA 205 H EIYL+D R+ PEK KT+LR V+ Sbjct: 182 KHHEIYLSDPRKADPEKMKTILRLPVS 208 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 330,634,848 Number of extensions: 13739418 Number of successful extensions: 31641 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 31600 Number of HSP's successfully gapped: 15 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)