BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0018.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979220.1| conserved hypothetical protein [Bacillus cereus... 100 2e-20 pir||JC4603 conserved hypothetical protein yhbF - Bacillus subti... 98 9e-20 ref|NP_832629.1| hypothetical Cytosolic Protein [Bacillus cereus... 97 2e-19 ref|NP_656759.1| hypothetical protein predicted by GeneMark [Bac... 97 2e-19 ref|NP_388777.1| alternate gene name: yzdB~similar to hypothetic... 97 2e-19 >ref|NP_979220.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41828.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 235 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 25/217 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRG------QG 54 + GE T D+ C + G + V G++ +++ + G+ V+G ++ E ++ G Sbjct: 25 IRGEGTISNDMSCNEFKTYGTSDVRGNMKVKNYVVYGDSEVQGNVDAEYVKVYGNTQIHG 84 Query: 55 EIRAECVHVEGI-----KFTGN-------LSVSGNCDAEDMQISGAVQIDGLLSAETLEL 102 + E V G+ KF+G+ L+V GN + ED+ ++G ++ DGLL+AE +++ Sbjct: 85 DAHIEKTKVRGMIDIAGKFSGDFVDVKGALNVRGNIEVEDLSLTGGLESDGLLNAENIQI 144 Query: 103 SL-FGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 SL + S+ E+GG +I I++ A P G L+ ++EGD + L++T A+ Sbjct: 145 SLRYEGSKVREIGGKNITIRKK---ARFLP-FISHVGNLQ--TSIVEGDDIYLEHTIAEV 198 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQVKV 198 VRG V IG GCEI VEY + NAVV+ ++ Sbjct: 199 VRGNNVTIGPGCEISVVEYHTSFNQKGNAVVKEHKQI 235 >pir||JC4603 conserved hypothetical protein yhbF - Bacillus subtilis emb|CAA55932.1| unnamed protein product [Bacillus subtilis] prf||2206362B ORF 2 Length = 235 Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 25/199 (12%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRGQGEIRAEC 60 V GE GD+ K+ + G KVSGSL + L G+ + G + GES Sbjct: 61 VLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIGGNMTGESC---------- 110 Query: 61 VHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLELSL-FGPSRAAEVGGGSIK 119 G LSV G+C+ E ++G V + GLL++ ++L L S E+GG +I Sbjct: 111 ------DVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDISHVQEIGGTTIT 164 Query: 120 IKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADTVRGGRVVIGSGCEIGTVE 179 +KR + G + A +IEGD V L+NT A VRG V+IG GC IGT+E Sbjct: 165 VKRRASFFSRKKG--------KLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIE 216 Query: 180 YRDFLDIHPNAVVRNQVKV 198 Y + P++ ++ + K+ Sbjct: 217 YEYKCECDPHSQIKEKTKL 235 >ref|NP_832629.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP09830.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 235 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 25/217 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRG------QG 54 + GE T D+ C + G + V G++ +++ + G+ V+G ++ E ++ G Sbjct: 25 IRGEGTITNDMSCNEFKTYGTSDVRGNVKVKNYVVYGDNEVQGNVDAEYVKVYGNTQIHG 84 Query: 55 EIRAECVHVEGI-----KFTGN-------LSVSGNCDAEDMQISGAVQIDGLLSAETLEL 102 + E V G+ KF+G+ L+V G+ + ED+ ++G ++ DGLL+AE +++ Sbjct: 85 DAHIEKTKVRGMIDIAGKFSGDFVDVKGALNVKGDIEVEDLSLTGGLESDGLLNAENIQI 144 Query: 103 SL-FGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 SL + S+ E+GG I +++ A P G L+ ++EGD + L++T A+ Sbjct: 145 SLRYEGSKVREIGGKKITVRKK---ARFIP-FTSHAGNLQ--TSIVEGDDIYLEHTIAEV 198 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQVKV 198 VRG V IG GCEI VEY + NAVV+ ++ Sbjct: 199 VRGNNVTIGPGCEISVVEYHTSFNQKGNAVVKEHKQI 235 >ref|NP_656759.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845219.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26705.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 235 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 25/217 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLR--GQGEIRA 58 + GE T D+ C + G + V G++ +++ + G+ V+G I+ E ++ G +I Sbjct: 25 IRGEGTISNDMSCNEFKTYGTSDVRGNMKVKNYVVYGDSEVQGNIDAEYVKVYGNAQIHG 84 Query: 59 EC----VHVEGI-----KFTGN-------LSVSGNCDAEDMQISGAVQIDGLLSAETLEL 102 + V G+ KF G+ L+V G+ + ED+ ++G ++ DGLL+AE +++ Sbjct: 85 DAHIKKTKVRGMMDIAGKFLGDFVDVKGALNVKGDIEVEDLSLTGGLESDGLLNAENIQI 144 Query: 103 SL-FGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 SL + S+ E+GG I +++ A + P G L+ +IEGD + L+ T A+ Sbjct: 145 SLRYEGSKVREIGGKKITVRKK---ARLIP-FTSHAGNLQ--TSIIEGDDIYLERTVAEI 198 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQVKV 198 VRG V IG GCEI VEY NAVV+ ++ Sbjct: 199 VRGNNVTIGPGCEISVVEYHTSFKQKGNAVVKEHKQI 235 >ref|NP_388777.1| alternate gene name: yzdB~similar to hypothetical proteins from B. subtilis [Bacillus subtilis] sp|P39133|YHBF_BACSU Hypothetical protein yhbF emb|CAB12724.1| yhbF [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 25/199 (12%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRGQGEIRAEC 60 V GE GD+ K+ + G KVSGSL + L G+ + G + GES Sbjct: 61 VLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIGGNMTGESC---------- 110 Query: 61 VHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLELSL-FGPSRAAEVGGGSIK 119 G LSV G+C+ E ++G V + GLL++ ++L L + E+GG +I Sbjct: 111 ------DVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDINHVQEIGGTTIT 164 Query: 120 IKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADTVRGGRVVIGSGCEIGTVE 179 +KR + G + A +IEGD V L+NT A VRG V+IG GC IGT+E Sbjct: 165 VKRRASFFSRKKG--------KLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIE 216 Query: 180 YRDFLDIHPNAVVRNQVKV 198 Y + P++ ++ + K+ Sbjct: 217 YEYKCECDPHSQIKEKTKL 235 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 276,246,883 Number of extensions: 10469679 Number of successful extensions: 23044 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 22989 Number of HSP's successfully gapped: 13 Length of query: 198 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 79 Effective length of database: 434,140,797 Effective search space: 34297122963 Effective search space used: 34297122963 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)