BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0010.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_624050.1| ABC-type dipeptide/oligopeptide/nickel transpor... 451 e-125 ref|NP_976579.1| oligopeptide ABC transporter, ATP-binding prote... 439 e-122 ref|NP_654163.1| ABC_tran, ABC transporter [Bacillus anthracis A... 437 e-121 ref|NP_830112.1| Oligopeptide transport ATP-binding protein oppD... 436 e-121 ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clo... 422 e-117 >ref|NP_624050.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25654.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 327 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/320 (65%), Positives = 260/320 (81%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 +++++ L T F+TEEG V AV+ VSF +REGETVC+VGESGCGKSVTA+S+M L+++P Sbjct: 3 RNIVEFRNLKTYFYTEEGVVKAVNDVSFSIREGETVCVVGESGCGKSVTALSLMRLIQSP 62 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G++ GG I F G D+L+L +R IRGNEI MIFQEPM+SLNPV+ IG+Q+MEPLM+H Sbjct: 63 PGKIVGGEIIFDGRDILKLSDAEMRRIRGNEIGMIFQEPMTSLNPVLTIGDQLMEPLMLH 122 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 ++KK+A +A+ELI QVGI R EQI SYPHELSGGM QRIMIA+A+SC+PKLLIADE Sbjct: 123 KHMTKKEAWNKAIELIKQVGIPRAEQIMTSYPHELSGGMRQRIMIAMAISCDPKLLIADE 182 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR KE M+++LITHDLG+VAEMADYV+VMY+G+++EE V Sbjct: 183 PTTALDVTIQAQILDLLRRLKEEKKMALMLITHDLGIVAEMADYVVVMYAGKVIEEAPVR 242 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 ELF +PKHPYTRGLLK+KPV+G+R E LY+IPGQVPNP+ L CYF DRCE+ M VCR Sbjct: 243 ELFKNPKHPYTRGLLKAKPVIGRRQERLYTIPGQVPNPIDLGDFCYFSDRCEYTMDVCRK 302 Query: 302 RQPRLKELDGGQKTACWLYE 321 + P L + G K ACWLYE Sbjct: 303 KMPPLVADENGHKVACWLYE 322 >ref|NP_976579.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39187.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 326 Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/321 (66%), Positives = 259/321 (80%), Gaps = 1/321 (0%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 K +++++ L T F TEEG V AV+ VSF VREGETVC+VGESGCGKSVTA+SIMGL+ A Sbjct: 3 KAVVELKDLQTHFQTEEGTVKAVNHVSFTVREGETVCVVGESGCGKSVTALSIMGLI-AE 61 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G V GG I + G+ LL + + LR++RGN+IAMIFQEPM+SLNPV +GEQI+E L H Sbjct: 62 SGSVVGGDILYEGKSLLGMKEKELRSLRGNDIAMIFQEPMTSLNPVFTVGEQIVETLREH 121 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 LSK +A +A+ELI +VGIAR ++I SYPHELSGGMLQRIMIA+A+SCNPKLLIADE Sbjct: 122 ELLSKNEAYKKAIELIRKVGIARADEIVHSYPHELSGGMLQRIMIAVALSCNPKLLIADE 181 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR+ KE SILLITHDLGVVAEMADYV+VMY G+++EE V+ Sbjct: 182 PTTALDVTIQAQILDLLRQVKEEFKTSILLITHDLGVVAEMADYVVVMYGGKVIEEAPVL 241 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 E+F +PKHPYT+GLLKSKPV+G+R+++LYSIPGQVPN + L++ CYF RCEHCM +C+ Sbjct: 242 EIFKNPKHPYTKGLLKSKPVMGKRIDKLYSIPGQVPNLVGLDEFCYFSGRCEHCMEICKE 301 Query: 302 RQPRLKELDGGQKTACWLYEE 322 P L D K ACWLYEE Sbjct: 302 EAPSLNVHDENHKVACWLYEE 322 >ref|NP_654163.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_842790.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24276.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 326 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/321 (65%), Positives = 258/321 (80%), Gaps = 1/321 (0%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 K +++++ L T F TEEG V AV+ VSF VREGETVC+VGESGCGKSVTA+SIMGL+ A Sbjct: 3 KAVVELKDLQTHFQTEEGTVKAVNHVSFSVREGETVCVVGESGCGKSVTALSIMGLI-AE 61 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G V GG I + G+ LL + + LR++RGN+IAMIFQEPM+SLNPV +GEQI+E L H Sbjct: 62 SGSVVGGDILYEGKSLLGMKEKELRSLRGNDIAMIFQEPMTSLNPVFTVGEQIVETLREH 121 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 LSK +A +A+ELI +VGIAR ++I SYPHELSGGMLQRIMIA+A+SCNPKLLIADE Sbjct: 122 ELLSKNEAYKKAIELIRKVGIARADEIVHSYPHELSGGMLQRIMIAVALSCNPKLLIADE 181 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR+ K SILLITHDLGVVAEMADYV+VMY G+++EE V+ Sbjct: 182 PTTALDVTIQAQILDLLRQIKREFKTSILLITHDLGVVAEMADYVVVMYGGKVIEEAPVL 241 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 E+F +PKHPYT+GLLKSKPV+G+R+++LYSIPGQVPN + L++ CYF RCEHCM +C+ Sbjct: 242 EIFQNPKHPYTKGLLKSKPVMGKRIDKLYSIPGQVPNLVGLDEFCYFSGRCEHCMEICKE 301 Query: 302 RQPRLKELDGGQKTACWLYEE 322 P L D K ACWLYEE Sbjct: 302 EAPNLNVHDENHKVACWLYEE 322 >ref|NP_830112.1| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 14579] gb|AAP07313.1| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 14579] Length = 326 Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/321 (66%), Positives = 257/321 (80%), Gaps = 1/321 (0%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 K +++++ L T F TEEG V AV+ VSF VREGETVC+VGESGCGKSVTA+SIMGL+ A Sbjct: 3 KAVVELKDLQTHFQTEEGTVKAVNHVSFSVREGETVCVVGESGCGKSVTALSIMGLI-AE 61 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G V GG I + G+ LL + + LR++RGN+IAMIFQEPM+SLNPV +GEQI+E L H Sbjct: 62 SGSVVGGDILYEGKSLLGMKEKELRSLRGNDIAMIFQEPMTSLNPVFTVGEQIVETLREH 121 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 LSK +A +A+ELI +VGIAR ++I SYPHELSGGMLQRIMIA+A+SCNPKLLIADE Sbjct: 122 ELLSKNEAYKKAIELIRKVGIARADEIVHSYPHELSGGMLQRIMIAVALSCNPKLLIADE 181 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR+ KE SILLITHDLGVVAEMADYV+VMY G+++EE V+ Sbjct: 182 PTTALDVTIQAQILDLLRQVKEEFKTSILLITHDLGVVAEMADYVVVMYGGKVIEEAPVL 241 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 E+F +PKHPYT+GLLKSKPV+G+R+++LYSIPGQVPN + L + CYF RCEHCM +C Sbjct: 242 EIFQNPKHPYTKGLLKSKPVMGKRIDKLYSIPGQVPNLVGLGEFCYFSGRCEHCMEICEK 301 Query: 302 RQPRLKELDGGQKTACWLYEE 322 P L D K ACWLYEE Sbjct: 302 EAPNLNVNDENHKVACWLYEE 322 >ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] pir||F96921 oligopeptide transport ATP-binding protein CAC0179 [imported] - Clostridium acetobutylicum gb|AAK78161.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] Length = 325 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 257/321 (80%) Query: 4 LMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGG 63 L++++ L T FHTEEG V AVD VSF+++E ET+ IVGESGCGKS+TAMSIM L+ P G Sbjct: 5 LLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLIPNPPG 64 Query: 64 QVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLK 123 ++ GG I F G+DL+++ ++ +R IRGN+I++IFQEPM+SLNPV +GEQI E L++H K Sbjct: 65 KIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEALILHKK 124 Query: 124 LSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPT 183 + KKQA+ A++++T V I R E+I+ +YPHELSGGM QR++IA+A+SC+P+LLIADEPT Sbjct: 125 MDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLIADEPT 184 Query: 184 TALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVEL 243 TALDVTIQAQILD++RE KE SI+LITHDLG+VAEMADYV+VMY+G+IVE+ V+EL Sbjct: 185 TALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKAPVIEL 244 Query: 244 FNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRSRQ 303 + +PKHPYT GLLKSKPV+ + ++LYSI GQVPNPL + + CYF+ RC +CR +Q Sbjct: 245 YKNPKHPYTVGLLKSKPVINRLQDKLYSIEGQVPNPLDMPEGCYFNPRCSKAKDICRKKQ 304 Query: 304 PRLKELDGGQKTACWLYEEAE 324 P LK++ G +CWL EE + Sbjct: 305 PNLKKVSEGHSVSCWLCEEVK 325 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 470,914,198 Number of extensions: 19003373 Number of successful extensions: 114690 Number of sequences better than 1.0e-05: 17675 Number of HSP's gapped: 96827 Number of HSP's successfully gapped: 18783 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)