BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0009.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830111.1| Oligopeptide transport system permease protein ... 420 e-116 ref|NP_976578.1| oligopeptide ABC transporter, permease protein ... 414 e-114 ref|NP_842789.1| oligopeptide ABC transporter, permease protein ... 412 e-114 ref|NP_349778.1| Oligopeptide ABC transporter, permease componen... 378 e-103 ref|NP_624049.1| ABC-type dipeptide/oligopeptide/nickel transpor... 322 6e-87 >ref|NP_830111.1| Oligopeptide transport system permease protein oppC [Bacillus cereus ATCC 14579] gb|AAP07312.1| Oligopeptide transport system permease protein oppC [Bacillus cereus ATCC 14579] Length = 306 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 192/297 (64%), Positives = 247/297 (83%) Query: 5 REPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMN 64 ++ + +R +SS +RQ+ K++ KN++ MF CFIGPFFSPYA KI +A++N Sbjct: 10 KKEKKRRNESSPWRQAFKKIKKNKMALVGFYALIFMFLFCFIGPFFSPYASGKIQVALIN 69 Query: 65 KAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQ 124 K PS H LGTD LGRDILTR+MQAGRISLT+GLASMVLSV +GALLGA+AG+YRGI D Sbjct: 70 KPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRGIVDN 129 Query: 125 IIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQML 184 IIMR+AD+LM++PGLPLL I GA+LSEWKVP+DYR+Y++M++LS+V WPGLAR+VRGQ+L Sbjct: 130 IIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPGLARLVRGQIL 189 Query: 185 SLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVM 244 SLRE+ FMQAA VLG++D RK+ +HL+PNV+P+LIV++TL + G+IL ES LS+ GLGV+ Sbjct: 190 SLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVV 249 Query: 245 PPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 PPTP+WGNMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK +R Sbjct: 250 PPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 306 >ref|NP_976578.1| oligopeptide ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS39186.1| oligopeptide ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 307 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/290 (65%), Positives = 241/290 (83%) Query: 12 QKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMNKAPSLQH 71 +SS +RQ+ K++ KN++ MF FIGP FSPYAD K+ + +NK PSL H Sbjct: 18 NESSPWRQAYKKIKKNKMALCGLYVLIFMFLFSFIGPIFSPYADGKVQVTQINKPPSLSH 77 Query: 72 LLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQIIMRIAD 131 LGTD LGRDILTR+MQAGRISLT+GLASM+LSV +GALLGA+AG+YRG+ D +IMR+AD Sbjct: 78 WLGTDQLGRDILTRLMQAGRISLTIGLASMLLSVILGALLGAIAGFYRGVVDHLIMRVAD 137 Query: 132 LLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQMLSLREREF 191 +LM+IPGLPLL I GA+LSEWK+P++YR+Y+VM++LS+V WPGLAR+VRGQ+L+LRE+ F Sbjct: 138 VLMSIPGLPLLIIMGAILSEWKLPSEYRLYVVMIILSLVGWPGLARLVRGQILTLREQAF 197 Query: 192 MQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVMPPTPTWG 251 MQAA VLGL+DSRK+ HHL+PNV PLLIV+ATL + G+ILSES LS+ GLGV+PPTP+WG Sbjct: 198 MQAADVLGLKDSRKIIHHLIPNVFPLLIVVATLGVAGSILSESALSYLGLGVVPPTPSWG 257 Query: 252 NMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 NMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK +R Sbjct: 258 NMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 307 >ref|NP_842789.1| oligopeptide ABC transporter, permease protein [Bacillus anthracis str. Ames] gb|AAP24275.1| oligopeptide ABC transporter, permease protein [Bacillus anthracis str. Ames] Length = 307 Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/290 (65%), Positives = 240/290 (82%) Query: 12 QKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMNKAPSLQH 71 +SS +RQ+ K++ KN++ MF FIGP FSPYAD K+ + +NK PSL H Sbjct: 18 NESSPWRQAYKKIKKNKMALCGLYVLIFMFLFSFIGPIFSPYADGKVQVTQINKPPSLSH 77 Query: 72 LLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQIIMRIAD 131 LGTD LGRDILTR+MQAGRISLT+GLASM+LSV +GALLGA+AG+YRG+ D +IMR+AD Sbjct: 78 WLGTDQLGRDILTRLMQAGRISLTIGLASMLLSVILGALLGAIAGFYRGVVDHLIMRVAD 137 Query: 132 LLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQMLSLREREF 191 +LM+IPGLPLL I GA+LSEWK+P++YR+Y+VM++LS+V WPGLAR+VRGQ+L+LRE+ F Sbjct: 138 VLMSIPGLPLLIIMGAILSEWKLPSEYRLYVVMIILSLVGWPGLARLVRGQILTLREQAF 197 Query: 192 MQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVMPPTPTWG 251 MQAA VLGL+DSRK+ HHL+PNV PLLIV+ATL + G+ILSES LS+ GLGV+PPTP WG Sbjct: 198 MQAADVLGLKDSRKIIHHLIPNVFPLLIVVATLGVAGSILSESALSYLGLGVVPPTPPWG 257 Query: 252 NMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 NMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK +R Sbjct: 258 NMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 307 >ref|NP_349778.1| Oligopeptide ABC transporter, permease component [Clostridium acetobutylicum] pir||C97291 oligopeptide ABC transporter, permease component CAC3181 [imported] - Clostridium acetobutylicum gb|AAK81118.1| Oligopeptide ABC transporter, permease component [Clostridium acetobutylicum] Length = 302 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/296 (63%), Positives = 235/296 (79%) Query: 5 REPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMN 64 + ++ SL +Q+LKR++KN+L + F+GPFFSPY+ N I+++++ Sbjct: 5 KNKNIKTSNKSLSKQTLKRILKNKLAIMSIIFLISILIFNFLGPFFSPYSYNDIDVSLIK 64 Query: 65 KAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQ 124 + PS+ HLLGTD GRD+LTR+M AGRISLTVGLASM+LS+ +G++LG ++GYY GI D Sbjct: 65 QPPSISHLLGTDDYGRDVLTRLMYAGRISLTVGLASMILSLLLGSILGCLSGYYGGILDI 124 Query: 125 IIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQML 184 I+MR++D+LM+IPGLPLL I ALLSE KVP+DYR+YIVMLMLS V WPGLARMVRGQ+L Sbjct: 125 ILMRLSDILMSIPGLPLLIIIAALLSELKVPSDYRLYIVMLMLSFVGWPGLARMVRGQVL 184 Query: 185 SLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVM 244 SLRE+ FM+AA +LGL D RK+FHHLLPN PLLIV+ATL+ ILSES LSF GLGV+ Sbjct: 185 SLREQNFMKAADILGLSDKRKIFHHLLPNTFPLLIVVATLSTADGILSESSLSFLGLGVI 244 Query: 245 PPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQK 300 PPTP+WGNMI+AANN+IDFQ WLWIPPGL+IF TVI+IN+ GD LRD LDPK K Sbjct: 245 PPTPSWGNMINAANNLIDFQKRSWLWIPPGLAIFLTVISINLLGDALRDALDPKMK 300 >ref|NP_624049.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Thermoanaerobacter tengcongensis] gb|AAM25653.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Thermoanaerobacter tengcongensis] Length = 305 Score = 322 bits (825), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 151/291 (51%), Positives = 211/291 (72%), Gaps = 1/291 (0%) Query: 10 QRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMNKAPSL 69 ++ +SL++ + +R ++N+ M FIGP+FSP+ D ++ N+ PS Sbjct: 15 KKGGTSLWQDAFRRFIRNKYAILGLVILTFMVLFAFIGPYFSPHQDVP-DVTKANQPPSK 73 Query: 70 QHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQIIMRI 129 +H LGTD LGRD+L R+M AGRISLT+G+A+ ++ + IG LG+++GYY G D IIMRI Sbjct: 74 EHWLGTDNLGRDVLLRLMLAGRISLTIGIAATLILLLIGVTLGSISGYYGGWLDVIIMRI 133 Query: 130 ADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQMLSLRER 189 AD++ +PGLP+L + GA++S+ K+P +R+Y VM +L I++W G+AR+VR Q+LSL+E+ Sbjct: 134 ADIIYAMPGLPILIVMGAIMSDLKIPPAHRIYYVMFILGIISWVGVARLVRSQILSLKEQ 193 Query: 190 EFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVMPPTPT 249 EFM A VLGLRDS+K+ HL PNV+P +IV TL + +I+SES LSF GLGV+PPTP+ Sbjct: 194 EFMLATEVLGLRDSKKIIKHLFPNVLPTVIVAGTLGVASSIISESALSFLGLGVVPPTPS 253 Query: 250 WGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQK 300 WG M+ AANNMIDF PWLWIPPG++I TV+AIN GD LRD DP+QK Sbjct: 254 WGYMLSAANNMIDFAKRPWLWIPPGVAIMLTVLAINFVGDALRDAFDPRQK 304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 398,249,782 Number of extensions: 14870598 Number of successful extensions: 57220 Number of sequences better than 1.0e-05: 1637 Number of HSP's gapped: 55098 Number of HSP's successfully gapped: 1642 Length of query: 301 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 176 Effective length of database: 417,850,203 Effective search space: 73541635728 Effective search space used: 73541635728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)