BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0005.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830109.1| Oligopeptide-binding protein oppA [Bacillus cer... 423 e-117 ref|NP_976576.1| oligopeptide ABC transporter, oligopeptide-bind... 421 e-116 ref|NP_976575.1| oligopeptide ABC transporter, substrate-binding... 418 e-115 ref|NP_654158.1| SBP_bac_5, Bacterial extracellular solute-bindi... 417 e-115 ref|NP_349776.1| Oligopeptide ABC transporter, periplasmic bindi... 384 e-105 >ref|NP_830109.1| Oligopeptide-binding protein oppA [Bacillus cereus ATCC 14579] gb|AAP07310.1| Oligopeptide-binding protein oppA [Bacillus cereus ATCC 14579] Length = 575 Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/355 (58%), Positives = 264/355 (74%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A D +K+P A+NR DT++VG++ P G F PYFQ++G+DGNV+S+++ASLV+ D + Sbjct: 48 EKIAATDKTKVPDKAKNRKDTLVVGISKPGGVFLPYFQQNGWDGNVTSVIFASLVSTDKQ 107 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 G P PELAE WDVS DQLTYTFHLRKDLKFSDGSPLTADDVAFT T+ +DKAY+G + Sbjct: 108 GKPIPELAEKWDVSSDQLTYTFHLRKDLKFSDGSPLTADDVAFTLTLLHDKAYEGEVDIS 167 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 VKGGK YKEG A +IEGI+V+DPQTI +T EK N+ A+ LG VLSKAYYGKDY Sbjct: 168 QYAVKGGKEYKEGKATSIEGIQVVDPQTIKITTEKVNSQAIFVLGGTVLSKAYYGKDYKQ 227 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+ +PL GPYK EK++PGQEVRF ANENY+ GK K ++FIYK + GD Sbjct: 228 NTSLDYLKDLYGNPLAAGPYKFEKYIPGQEVRFVANENYYAGKAKIQNFIYKITSGDTKL 287 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGEVD+ DE +E+ KAL F NI T ++ Y+ +N LKDK+VRQA+ Sbjct: 288 QLFQTGEVDHTGLGTGDEVLEQAKALEFANIQIETAPSFSYIYMNNNKPYLKDKKVRQAL 347 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 +YGLDR+ YVD A +G G++AN+P P SWAYTEEG+N Y+YD EKAK+LLD+A Sbjct: 348 IYGLDRKK-YVDTALKGYGTVANVPIHPTSWAYTEEGVNKYEYDKEKAKKLLDEA 401 >ref|NP_976576.1| oligopeptide ABC transporter, oligopeptide-binding protein, putative [Bacillus cereus ATCC 10987] gb|AAS39184.1| oligopeptide ABC transporter, oligopeptide-binding protein, putative [Bacillus cereus ATCC 10987] Length = 575 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/355 (59%), Positives = 262/355 (73%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A D K P A R DT I ++ P G F PYFQE+G+DGNV+S+++ASLVT D + Sbjct: 48 ESIPATDKKKSPEKANQRKDTFITAISKPGGVFLPYFQENGWDGNVTSVIFASLVTTDKQ 107 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 P P+LAE WD+S DQLTYTFHLRK+LKFSDGSPLTA+DVAFT T+ +DKAY+GG + Sbjct: 108 SKPIPDLAEKWDISADQLTYTFHLRKNLKFSDGSPLTAEDVAFTLTLLHDKAYEGGMDIA 167 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 VKGGK YKEG A +IEGI+V+DPQTI +T EK N+ AL+ LG VLSKAYYGKDY Sbjct: 168 QYAVKGGKEYKEGKATSIEGIQVVDPQTIKITTEKVNSQALINLGGPVLSKAYYGKDYKQ 227 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+ P+ GPYK EK++PGQEVRF ANE+Y+ GKPK ++FIYK + GD + Sbjct: 228 NTSLDYLKALYGQPIAAGPYKFEKYVPGQEVRFVANEHYYAGKPKIKNFIYKITSGDTGF 287 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGE+DY+ F A ENI++LK L F NI + S Y+ VN K LKDK+VRQA+ Sbjct: 288 QLFQTGELDYSGFRANPENIDQLKGLEFANINLESSSDIAYIYVNNKKSYLKDKKVRQAL 347 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 YGLDR+ YVD A QG GS+AN+P +P+SWAYTEEGIN Y +D EKAK+LLD+A Sbjct: 348 TYGLDRKK-YVDTALQGYGSVANVPIAPVSWAYTEEGINKYPHDVEKAKKLLDEA 401 >ref|NP_976575.1| oligopeptide ABC transporter, substrate-binding protein, putative [Bacillus cereus ATCC 10987] gb|AAS39183.1| oligopeptide ABC transporter, substrate-binding protein, putative [Bacillus cereus ATCC 10987] Length = 567 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/353 (56%), Positives = 259/353 (73%), Gaps = 1/353 (0%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A+D +K P A+ R DT +VG+ P G F P+F E+G+DGN++ ++A LV +D + Sbjct: 41 EFIQASDKAKSPVKAKERKDTFVVGMPSPGGIFLPHFMENGWDGNITQAIFAPLVGLDKE 100 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 G P P LA+ WD+S+DQLTYTF+L+ LKFSDGSPLTADDVAFT T+ +D Y G + + Sbjct: 101 GKPIPILAKKWDISEDQLTYTFYLKDGLKFSDGSPLTADDVAFTLTLLHDPTYSGATDIS 160 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 +KGG+AYKEG A IEGI+VIDP+TI+VT EK NA L +G V+SKAYYGK+Y Sbjct: 161 QTAIKGGQAYKEGKATFIEGIQVIDPKTITVTTEKVNAQTLSLIGGEVISKAYYGKEYKQ 220 Query: 243 GHLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-WQ 301 GHLEY+K+L+ P+G G YKL+K++PGQEVRF ANENYF+GKPK EHFIYK S+GD Q Sbjct: 221 GHLEYLKELYGKPMGAGAYKLDKYIPGQEVRFVANENYFEGKPKIEHFIYKISKGDTKLQ 280 Query: 302 FLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAIM 361 + GEVDY F+ E IE+LK LGF NI YT S+YGY+++N K KDK VRQA + Sbjct: 281 QFQAGEVDYDGFTTNTETIEQLKDLGFANINVYTGSSYGYIKMNYKKPYFKDKRVRQAFI 340 Query: 362 YGLDRQSIYVDAAQGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 YGL+RQ + QG S+ N+P +P+SWAYTEEGIN Y+Y+ EKAK+LLD+A Sbjct: 341 YGLERQKVVDTYFQGYASLVNVPITPVSWAYTEEGINKYEYNLEKAKELLDEA 393 >ref|NP_654158.1| SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5 [Bacillus anthracis A2012] ref|NP_842787.1| oligopeptide ABC transporter, oligopeptide-binding protein, putative [Bacillus anthracis str. Ames] gb|AAP24273.1| oligopeptide ABC transporter, oligopeptide-binding protein, putative [Bacillus anthracis str. Ames] Length = 555 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/355 (58%), Positives = 260/355 (73%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A D K P A R DT I ++ P G F PYFQE+G+DGNV+S+++ASLVT D + Sbjct: 28 ESIPATDKKKSPEKANQRKDTFITAISKPGGVFLPYFQENGWDGNVTSVIFASLVTTDKQ 87 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 P P+LAE WD+S DQLTYTFHLRK+LKFSDGSPLTADDVAFT T+ +DKAY+GG + Sbjct: 88 SKPIPDLAEKWDISADQLTYTFHLRKNLKFSDGSPLTADDVAFTLTLLHDKAYEGGLDIA 147 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 VKGGK YKEG +IEGI+V+DPQTI +T EK N+ AL LG VLSKAYYGKDY Sbjct: 148 QYAVKGGKEYKEGKTTSIEGIQVVDPQTIKITTEKVNSQALTNLGGPVLSKAYYGKDYKQ 207 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+ P+ GPYK EK++PGQEVRF +NE+Y+ GKPK ++FIYK + GD + Sbjct: 208 NTSLDYLKALYGQPIAAGPYKFEKYVPGQEVRFVSNEHYYAGKPKIKNFIYKITSGDTGF 267 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGE+DY+ F A ENI++LK L F NI + S Y+ VN K LKDK+VRQA+ Sbjct: 268 QLFQTGELDYSGFRANPENIDQLKGLEFANINLESSSDIAYIYVNNKKSYLKDKKVRQAL 327 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 YGLDR+ YVD A QG GS+AN+P +P+SWAYTEEGIN Y +D EKAK+LLD+A Sbjct: 328 TYGLDRKK-YVDTALQGYGSVANVPIAPVSWAYTEEGINKYPHDVEKAKKLLDEA 381 >ref|NP_349776.1| Oligopeptide ABC transporter, periplasmic binding component [Clostridium acetobutylicum] pir||A97291 oligopeptide ABC transporter, periplasmic binding component CAC3179 [imported] - Clostridium acetobutylicum gb|AAK81116.1| Oligopeptide ABC transporter, periplasmic binding component [Clostridium acetobutylicum] Length = 567 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/352 (53%), Positives = 246/352 (69%), Gaps = 5/352 (1%) Query: 71 SKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDKGVPTPELA 130 SK P A+NR DT I +++P G F PYF ++G+DGN + ++ SLV+ D+KG P +LA Sbjct: 50 SKNPEKAKNRKDTFIAAISEPGGVFLPYFYDNGWDGNATDPIFPSLVSTDEKGNPIADLA 109 Query: 131 ESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVPSMNVKGGK 190 E WD+S D LTYT+HLRK LKFSDGSPLT+DDVAFT T+ D +Y G + + +KG Sbjct: 110 EKWDISSDNLTYTYHLRKRLKFSDGSPLTSDDVAFTLTLLDDPSYSGSFDISTCYIKGST 169 Query: 191 AYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTFGHLEYIKK 250 YK G A +I GI V+DP TI +T EK N L LG VLSKAYYGKDY G+L+Y+K Sbjct: 170 DYKNGKATSISGIAVVDPLTIKITTEKINPLNLTRLGGQVLSKAYYGKDYKKGNLDYLKS 229 Query: 251 LHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-WQFLETGEVD 309 L+ PLG GPYKL+K++PGQE+R+TANENY+KGKPK E+FI+K + D Q +TGE+D Sbjct: 230 LYSRPLGAGPYKLDKYIPGQEIRYTANENYYKGKPKIENFIFKVTSKDTNLQLFQTGEID 289 Query: 310 YASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAIMYGLDRQSI 369 SFS + +++L+ LGF NI T S YG++ +N K LKDK VRQA++YGLDRQ I Sbjct: 290 SDSFSTDKDTVDQLENLGFANIRISTVSDYGFVYMNNKKPYLKDKNVRQALIYGLDRQKI 349 Query: 370 YVDAAQGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQAXXXXCWR 421 A +G G +AN+P SP+ +YT +GIN YK++PEKAK+LL+ WR Sbjct: 350 VDVAYKGYGEVANVPTSPLVLSYTTDGINSYKFNPEKAKKLLED----DGWR 397 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 680,302,671 Number of extensions: 29187801 Number of successful extensions: 55516 Number of sequences better than 1.0e-05: 1229 Number of HSP's gapped: 53989 Number of HSP's successfully gapped: 1233 Length of query: 455 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 326 Effective length of database: 406,989,807 Effective search space: 132678677082 Effective search space used: 132678677082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)