BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0001.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ38144.1| unknown [environmental sequence] 550 e-155 ref|ZP_00091639.1| hypothetical protein [Azotobacter vinelandii] 364 2e-99 gb|EAI65678.1| unknown [environmental sequence] 353 5e-96 gb|EAJ34984.1| unknown [environmental sequence] 348 1e-94 ref|ZP_00028499.1| hypothetical protein [Burkholderia fungorum] 324 2e-87 >gb|EAJ38144.1| unknown [environmental sequence] Length = 352 Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust. Identities = 255/348 (73%), Positives = 295/348 (84%) Query: 9 RKTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKL 68 +K ALV+GA GVIGRNL+ HLATL +W +IG++RRGG + RV+YIAADLLD +TR KL Sbjct: 5 KKVALVVGAQGVIGRNLVDHLATLDDWTVIGLARRGGEASERVQYIAADLLDQADTRSKL 64 Query: 69 GTLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAH 128 G L VTH+FYAAYQ+RPTWAELVPPNLAMLVN ++A+EPVA LQH+SLMQGYKVYG H Sbjct: 65 GALNHVTHVFYAAYQDRPTWAELVPPNLAMLVNVLDAIEPVAAGLQHVSLMQGYKVYGGH 124 Query: 129 LGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAM 188 LGPFKTPARE DA+ MPPEF DQQ L RQ GK WTWSA+RP+VV GFALGNPMNLA+ Sbjct: 125 LGPFKTPAREDDAHFMPPEFMFDQQTLLSSRQQGKRWTWSAIRPAVVGGFALGNPMNLAV 184 Query: 189 VIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNG 248 IAVYAS+SKELGLPLRFPGKPGAY LLEMTDAGLLA+ATVWAAT+ R ANQAFNI+NG Sbjct: 185 AIAVYASMSKELGLPLRFPGKPGAYDKLLEMTDAGLLARATVWAATEPRAANQAFNISNG 244 Query: 249 DLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWG 308 DLFRW+++WPK+A +F L+ APPLPMSL+ +M DK +LW GM ++ L P Y+DVS+W Sbjct: 245 DLFRWNDMWPKIARYFALDVAPPLPMSLNTIMADKASLWTGMAARHGLHPVPYQDVSAWR 304 Query: 309 FGDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356 F DFVFSWDYD F DGSKARRFGFHEF+DTEAMF+ IF DLRSRK+IP Sbjct: 305 FADFVFSWDYDMFGDGSKARRFGFHEFVDTEAMFIAIFDDLRSRKLIP 352 >ref|ZP_00091639.1| hypothetical protein [Azotobacter vinelandii] Length = 350 Score = 364 bits (934), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 175/350 (50%), Positives = 233/350 (66%), Gaps = 1/350 (0%) Query: 7 VQRKTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRL 66 ++K ALV G GVIGRNL+ HLATL +W+ IG+SRR + RYI+ DLLDA + R Sbjct: 2 TEKKKALVAGGLGVIGRNLVEHLATLDDWETIGLSRRPPPGDAAARYISVDLLDARDIRA 61 Query: 67 KLGTLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYG 126 +LG L +VTHIF+AAYQE T L+ NL ML N VE V + L+ + L +G K YG Sbjct: 62 RLGALDDVTHIFHAAYQEHATPQALIDANLGMLRNLVETVSAASPKLRRVVLYEGAKYYG 121 Query: 127 AHLGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNL 186 AHLG F+TPARE D HMPP F D Q++L G+ W +RP VVCGFA+GNPMNL Sbjct: 122 AHLGAFETPAREDDPRHMPPNFYYDMQDWLLAFAAGRPWDAVVLRPDVVCGFAVGNPMNL 181 Query: 187 AMVIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNIT 246 AMVIAVYASISK LGLPLRFPG Y L ++TDA LA+ + WAAT +R +A+N+T Sbjct: 182 AMVIAVYASISKALGLPLRFPGSAACYGKLAQVTDAAQLARGSAWAATLAR-GGEAYNLT 240 Query: 247 NGDLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSS 306 NGD+FRW ++W +A +F +E P + L+ M DK LW + E++ L P Y +++ Sbjct: 241 NGDVFRWRQVWEAVAHWFDMEVGEPQTIPLAAYMADKGPLWQALTERHGLRPIPYEQLAA 300 Query: 307 WGFGDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356 W FGDF+F D+D + +K R+ GFH+ +D+ MF+ +F LR+R++IP Sbjct: 301 WAFGDFIFRCDWDVISSTTKIRQAGFHDVVDSTEMFLRLFEQLRARRIIP 350 >gb|EAI65678.1| unknown [environmental sequence] Length = 347 Score = 353 bits (905), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 172/347 (49%), Positives = 227/347 (65%), Gaps = 1/347 (0%) Query: 10 KTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKLG 69 KT +V GA GVIGR ++ H T D++ VSRR +R R++A DLLD E L Sbjct: 2 KTVVVAGAVGVIGRGVLAHYETR-GVDLVAVSRRAPDFPTRARHLAVDLLDRESCEALLA 60 Query: 70 TLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAHL 129 +PE TH+ +AAYQE+PT AELV NL ML N VEA+E A LQH++LMQG K YG H+ Sbjct: 61 QVPEATHLVFAAYQEKPTPAELVAVNLRMLKNTVEAMEKYAPKLQHVTLMQGGKAYGVHI 120 Query: 130 GPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAMV 189 GP +PA+E+D HMPP F DQ++FL +R +GK+W+W+A RP V G A+GNPMNL MV Sbjct: 121 GPIPSPAKESDPRHMPPNFYYDQEDFLRERSVGKSWSWTAFRPEGVAGVAVGNPMNLLMV 180 Query: 190 IAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNGD 249 IAVY +++K LG+P+ FPG AY +L ++TD +LA A WA C + +NITNGD Sbjct: 181 IAVYGTLAKALGVPMSFPGPRAAYDALYQITDTRILASAVDWAGETDACRGEIYNITNGD 240 Query: 250 LFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWGF 309 FRW +WP+LA FF P PMSL +M DK LWN +VEK++L Y + SW F Sbjct: 241 YFRWSRVWPRLAGFFNAPVGEPFPMSLQQMMADKAELWNRLVEKHNLRDYPYDQIVSWKF 300 Query: 310 GDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356 GD +F +D + KAR+ GFH ID+E M++ + TDLR ++ IP Sbjct: 301 GDMIFKTTFDNISSTIKARKHGFHACIDSEEMYIEMLTDLREQRYIP 347 >gb|EAJ34984.1| unknown [environmental sequence] Length = 351 Score = 348 bits (893), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 170/347 (48%), Positives = 226/347 (65%), Gaps = 1/347 (0%) Query: 10 KTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKLG 69 K ALV G GVIGRNL+ HLA +W + +SRR + R++ DL DA TR L Sbjct: 6 KHALVAGGLGVIGRNLVEHLAARSDWKVTAISRRSPDFQTSARFLPVDLTDANATRAVLA 65 Query: 70 TLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAHL 129 L +VTH+FYAAYQE + V N+AMLVN VEA+E + LQ + L +G K YGAHL Sbjct: 66 GLGDVTHVFYAAYQEHADPRQQVDINVAMLVNTVEAIEAASPALQRVVLYEGAKYYGAHL 125 Query: 130 GPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAMV 189 G F TPA E D MPP F DQ+++L + GKTW +RP VVCGFALGNPMNLAMV Sbjct: 126 GAFPTPAHEDDPRQMPPMFYYDQEDWLRTKADGKTWDAVVLRPDVVCGFALGNPMNLAMV 185 Query: 190 IAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNGD 249 IAVYA+ISKELGLPLRFPG Y L ++TDA LAQ + WAA + A+N+TNGD Sbjct: 186 IAVYATISKELGLPLRFPGSLDCYGRLAQVTDAAQLAQGSQWAA-EHATGGAAYNLTNGD 244 Query: 250 LFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWGF 309 +FRW+ +W A +F + A P+ + L+ +M DK ++W +V ++ L P Y V+SW F Sbjct: 245 VFRWNRVWATFARYFDMPLAAPMTIPLTSMMADKASVWERIVARHGLVPVPYGHVASWAF 304 Query: 310 GDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356 GDF+F D+D + ++ R+ GF+ +D+E MF+ +F + R+R+VIP Sbjct: 305 GDFIFRCDWDVISSTTRIRQVGFYPVVDSETMFLRLFDEFRARRVIP 351 >ref|ZP_00028499.1| hypothetical protein [Burkholderia fungorum] Length = 356 Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 229/354 (64%), Gaps = 13/354 (3%) Query: 13 LVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKLGTLP 72 L++GA G +G+ + H +LPEW ++G SRR V ++ +++ DL D + KLG L Sbjct: 5 LIVGALGAVGQCALEHFESLPEWQVVGASRRKPVFPTKAEWVSVDLRDRADCEAKLGQLR 64 Query: 73 EVTHIFYAAYQERPT----WAEL--VPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYG 126 +VTHI Y A E+ W+E+ V NL ML N +E VE + NL+HI+++QG K YG Sbjct: 65 DVTHIAYTAVYEKADVTRGWSEMDHVQINLDMLKNCIEVVEKASTNLRHITMLQGTKAYG 124 Query: 127 AHLGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNL 186 HLGPF+ PARE+D +M P F Q ++L ++Q GK W+W+ +RP +VCG ALG+P+N+ Sbjct: 125 GHLGPFRQPARESDPRYMGPNFYYPQMDWLAEQQKGKDWSWTILRPQIVCGIALGSPLNI 184 Query: 187 AMVIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNIT 246 I VYA+IS+E G+PLRFPG GA + E TDA L+A+A WA T S ANQ FNIT Sbjct: 185 VSAIGVYAAISREYGIPLRFPG--GA-SRIGEATDARLIAKAMAWAGTHSAAANQTFNIT 241 Query: 247 NGDLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRD-VS 305 NGD++ W+ +WP++A F +ETAP P SL+ VM E +W+ +V+KY L PN+Y + V Sbjct: 242 NGDVYVWENIWPRIAKLFDMETAPAHPFSLARVMPQNEPIWDKIVQKYDLAPNTYAEIVP 301 Query: 306 SWGFGDFVFSWDYD---FFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356 SW F DF+ + K R+ GF++ ID+E MF+ + +DL+ R+V+P Sbjct: 302 SWQFADFLLGYGQRPNPHHMSTIKIRQAGFNDCIDSEEMFVELISDLQRRRVLP 355 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 543,119,303 Number of extensions: 22349002 Number of successful extensions: 48753 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 48661 Number of HSP's successfully gapped: 51 Length of query: 356 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 229 Effective length of database: 412,420,005 Effective search space: 94444181145 Effective search space used: 94444181145 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)