BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0008.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833275.1| Transcriptional regulator [Bacillus cereus ATCC... 238 9e-62 ref|NP_979853.1| membrane protein, putative [Bacillus cereus ATC... 236 2e-61 ref|NP_657449.1| Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family [Bacill... 234 8e-61 ref|ZP_00152985.1| hypothetical protein Daro123201 [Dechloromona... 152 5e-36 ref|NP_404109.1| putative membrane protein [Yersinia pestis] >gi... 75 1e-12 >ref|NP_833275.1| Transcriptional regulator [Bacillus cereus ATCC 14579] ref|NP_845867.1| membrane protein, putative [Bacillus anthracis str. Ames] gb|AAP10476.1| Transcriptional regulator [Bacillus cereus ATCC 14579] gb|AAP27353.1| membrane protein, putative [Bacillus anthracis str. Ames] Length = 206 Score = 238 bits (606), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 119/207 (57%), Positives = 144/207 (69%), Gaps = 1/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S +PWAIFLG FAQ+ Sbjct: 1 MSNQT-TTHHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSLVLPWAIFLGGFAQI 59 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ +WLI+LGVFG LA+ D KQLG F+GYL Sbjct: 60 FACIHDAKHNNTFGTTAFGAYGLFWLGVGMTWLIQLGVFGEKLAQAADSKQLGVAFIGYL 119 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ ++ + GV H LAA SEL I ++S Y Sbjct: 120 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSLSTLGVMPHAMHNLAAYSELLISLLSFY 179 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 180 GSAAAVLNTHFGKVVLPVGKPFGIFKK 206 >ref|NP_979853.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS42461.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 206 Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/207 (57%), Positives = 143/207 (69%), Gaps = 1/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S +PWAIFLG FAQ+ Sbjct: 1 MSNQT-TTHHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSLVLPWAIFLGGFAQI 59 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ +WLI+LGVFG L + D KQLG F+GYL Sbjct: 60 FACIHDAKHNNTFGTTAFGAYGLFWLGVGMTWLIQLGVFGEKLVQAADSKQLGVAFIGYL 119 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ ++ + GV H LAA SEL I ++S Y Sbjct: 120 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSLSTLGVMPHAMHNLAAYSELLISLLSFY 179 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 180 GSAAAVLNTHFGKVVLPVGKPFGIFKK 206 >ref|NP_657449.1| Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family [Bacillus anthracis A2012] Length = 206 Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 118/207 (57%), Positives = 143/207 (69%), Gaps = 1/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S +PWAIFLG FAQ+ Sbjct: 1 MSNQT-TTHHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSLVLPWAIFLGGFAQI 59 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ +WLI+LGVFG LA+ D KQLG F+G L Sbjct: 60 FACIHDAKHNNTFGTTAFGAYGLFWLGVGMTWLIQLGVFGEKLAQAADSKQLGVAFIGXL 119 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ ++ + GV H LAA SEL I ++S Y Sbjct: 120 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSLSTLGVMPHAMHNLAAYSELLISLLSFY 179 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 180 GSAAAVLNTHFGKVVLPVGKPFGIFKK 206 >ref|ZP_00152985.1| hypothetical protein Daro123201 [Dechloromonas aromatica RCB] Length = 197 Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 105/192 (54%) Query: 22 ADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQLFASIQDAKHNNTFGM 81 +DP+A+G+FGL++VT VA+SQK+ TTG +Y IPWA+ LG+ AQ++AS D K NN FG Sbjct: 2 SDPTALGVFGLSMVTFVAASQKMGWTTGATYIIPWALLLGSLAQIWASTIDFKKNNYFGS 61 Query: 82 TAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYLVFTLFMTLGAVEANR 141 GAY FW +A W I G G DP+QL + GY F+LF+ + A E N+ Sbjct: 62 IVLGAYGLFWSAVAMHWAISQGWLGAVDPAKADPRQLAYACFGYFFFSLFIMVAAFEVNK 121 Query: 142 XXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLYGCGASVLNAHFGRQF 201 + GV F LAA SEL I + Y G LN++FGR Sbjct: 122 MFALMLVLINVLLPSLGLSILGVNPPLFSALAAWSELLISLAGFYTAGGLFLNSYFGRTL 181 Query: 202 LPVGDPLGIFKK 213 +P+G P G +K Sbjct: 182 IPLGKPFGFIRK 193 >ref|NP_404109.1| putative membrane protein [Yersinia pestis] ref|NP_671004.1| hypothetical protein y3707 [Yersinia pestis KIM] pir||AH0057 probable membrane protein YPO0467 [imported] - Yersinia pestis (strain CO92) emb|CAC89323.1| putative membrane protein [Yersinia pestis CO92] gb|AAM87255.1| hypothetical protein [Yersinia pestis KIM] Length = 203 Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 9/194 (4%) Query: 19 IVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQLFASIQDAKHNNT 78 I A+P +GL G + T++ + S + IF G AQ+ A + + K NT Sbjct: 4 IKLANPGPLGLMGFGMTTVLLNLHNAGFFPLSSVILSMGIFYGGLAQILAGLLEYKKGNT 63 Query: 79 FGMTAFGAYAFFWFGMAASWLI-KLGVFGTALAEGVDPKQLGFVFLG-YLVFTLFMTLGA 136 F TAF +Y FW + ++ K+G LA+ D + LG V+LG + +FTLFM +G Sbjct: 64 FAATAFTSYGAFWLSLVGLLMLPKMG-----LADATDAQFLG-VYLGLWGIFTLFMFIGT 117 Query: 137 VEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLYGCGASVLNAH 196 + ANR + +F A + G ++Y A VLN Sbjct: 118 LPANRALQFVFGSLTILFALLAVGNF-TDNHTLLMFAGFEGIICGASAIYLAMAEVLNEQ 176 Query: 197 FGRQFLPVGDPLGI 210 +GR LP+G+PL I Sbjct: 177 YGRTILPIGEPLPI 190 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 267,297,465 Number of extensions: 9300332 Number of successful extensions: 26818 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 26768 Number of HSP's successfully gapped: 46 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)