BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0007.p (788 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00028291.1| COG2200: FOG: EAL domain [Burkholderia fungorum] 317 8e-85 gb|EAH95270.1| unknown [environmental sequence] 312 2e-83 ref|NP_715981.1| sensory box protein [Shewanella oneidensis MR-1... 312 3e-83 gb|EAI21209.1| unknown [environmental sequence] 309 2e-82 ref|NP_421888.1| sensory box/GGDEF family protein [Caulobacter c... 302 2e-80 >ref|ZP_00028291.1| COG2200: FOG: EAL domain [Burkholderia fungorum] Length = 1059 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 265/463 (57%), Gaps = 5/463 (1%) Query: 325 IISTGRDEFSDVEHEFNRMIDSXXXXXXXXXXXSML--DPLTHLPNRSLFFAKLNAAIGA 382 ++S RD +++ H +ID + D LT LPNR LF +L +G Sbjct: 595 MVSAVRDRRANLSHYICTLIDITDRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGN 654 Query: 383 AKGSNRQIALVFIDLDHFKTVNDTLGHDFGDAMLQEIAFRLTQAVGTHDVVSRLGGDEFT 442 A+ + +++A++FIDLD FK +ND+LGH GD++L+ ++ RL QAV T+D VSRLGGDEFT Sbjct: 655 ARRTGQRVAVLFIDLDRFKNINDSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFT 714 Query: 443 ILLSDIPDSAAISAQLSN-IQDALSMPHQIQGHLFYCTASIGISIYPQNGDDADYLVKQA 501 ++L+ + ++A ++ + + + PH++ G + S+G++++P +G+D + L++ A Sbjct: 715 VILNSVSNAADVTRTIEERLLPLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNA 774 Query: 502 DLAMLHVKGTGRNNIFQYSEDLEESIRRKKVXXXXXXXXXXNAEFEVHYQPILNAERLQV 561 D AM KG GRN + ++ D+ E R + EF + YQP ++A ++ Sbjct: 775 DAAMYQAKGAGRNLVKFFAPDIAERTRYRLTLEACLRSAIAMHEFRLEYQPCVDAHTGEL 834 Query: 562 HKVEALLRWTSPIYGPVSPAEFIPLAETSGSIVSIGGWVLRQVCADMRRFRESGLF-LTA 620 VE LLRW SP G VSPA+FIP+AE + I+ IG WV+ + C + + GL L Sbjct: 835 VAVEGLLRWNSPQIGIVSPAQFIPVAEDTRLIIPIGAWVINEACQQIAAWDAEGLTPLRV 894 Query: 621 AVNISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLV-NGDSILESLQQLRAHGF 679 ++N+SA VL+ N ++ L + +RA G Sbjct: 895 SINLSAIQLRDPDLIGTLADSLARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGV 954 Query: 680 RISLDDFGTGFSSLSYLRRFPVDVIKIDRSFVSEMTPHPQGDVLVKAIIELSHNLGLSVV 739 ++SLDDFG G+SSLSYL RFP+D +KIDR+FV +M +V+AIIEL H LGL VV Sbjct: 955 KLSLDDFGIGYSSLSYLNRFPLDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVV 1014 Query: 740 SEGIELQEQFDMLRSLGSDELQGFYISKPVRAGEIRSFLSRKK 782 +EG+E + Q +LR++G DELQGF SK + ++ S+ + +K Sbjct: 1015 AEGVESEHQARILRTIGCDELQGFLFSKALSPADLWSWTNARK 1057 >gb|EAH95270.1| unknown [environmental sequence] Length = 1512 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 169/420 (40%), Positives = 231/420 (55%), Gaps = 1/420 (0%) Query: 360 LDPLTHLPNRSLFFAKLNAAIGAAKGSNRQIALVFIDLDHFKTVNDTLGHDFGDAMLQEI 419 D LT LPNR+LF +LN AI A SN +AL+F+DLD FK +ND++GH GD +L+ + Sbjct: 1081 FDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAV 1140 Query: 420 AFRLTQAVGTHDVVSRLGGDEFTILLSDIPDSAAISAQLSNIQDALSMPHQIQGHLFYCT 479 A RL AV D V+RLGGDEFTI+L + + A + + A P ++ + Sbjct: 1141 AHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLEDKSLTIS 1200 Query: 480 ASIGISIYPQNGDDADYLVKQADLAMLHVKGTGRNNIFQYSEDLEESIRRKKVXXXXXXX 539 SIGIS+YP + D D L+K AD AM H K GRNN Y+ L E R + Sbjct: 1201 TSIGISLYPNDAVDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMLLETGLKQ 1260 Query: 540 XXXNAEFEVHYQPILNAERLQVHKVEALLRWTSPIYGPVSPAEFIPLAETSGSIVSIGGW 599 E + YQP + +EALLRW GP+SPAEFIPLAE +G I IG W Sbjct: 1261 AISRNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHW 1320 Query: 600 VLRQVCADMRRFRESGLF-LTAAVNISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 658 V+ C + + E G +T AVN+SA Sbjct: 1321 VINHACQQLAEWNELGFSDITMAVNLSARQLKADIISTIEVALAVSGLPAQALELELTES 1380 Query: 659 XVLVNGDSILESLQQLRAHGFRISLDDFGTGFSSLSYLRRFPVDVIKIDRSFVSEMTPHP 718 ++ N + L +L+A G I++DDFGTG+SSLSYL+RFP+D +KIDR FV ++T P Sbjct: 1381 MIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDP 1440 Query: 719 QGDVLVKAIIELSHNLGLSVVSEGIELQEQFDMLRSLGSDELQGFYISKPVRAGEIRSFL 778 + AII L+H+L L+VV+EG+E QEQ + L G D++QGF +SKP+ A + ++ L Sbjct: 1441 DDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAKDCQTLL 1500 >ref|NP_715981.1| sensory box protein [Shewanella oneidensis MR-1] gb|AAN53426.1| sensory box protein [Shewanella oneidensis MR-1] Length = 1515 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/423 (39%), Positives = 233/423 (55%), Gaps = 1/423 (0%) Query: 360 LDPLTHLPNRSLFFAKLNAAIGAAKGSNRQIALVFIDLDHFKTVNDTLGHDFGDAMLQEI 419 D LT LPNR+LF +LN AI A SN +AL+F+DLD FK +ND++GH GD +L+ + Sbjct: 1084 FDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAV 1143 Query: 420 AFRLTQAVGTHDVVSRLGGDEFTILLSDIPDSAAISAQLSNIQDALSMPHQIQGHLFYCT 479 A RL AV D V+RLGGDEFTI+L + + A + + A P + + Sbjct: 1144 AHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNIS 1203 Query: 480 ASIGISIYPQNGDDADYLVKQADLAMLHVKGTGRNNIFQYSEDLEESIRRKKVXXXXXXX 539 SIGIS+YP + D D L+K AD AM H K GRNN Y+ L E R Sbjct: 1204 TSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQ 1263 Query: 540 XXXNAEFEVHYQPILNAERLQVHKVEALLRWTSPIYGPVSPAEFIPLAETSGSIVSIGGW 599 + E + YQP + +EALLRW GP+SPAEFIPLAE +G I IG W Sbjct: 1264 AISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHW 1323 Query: 600 VLRQVCADMRRFRESGLF-LTAAVNISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 658 V+ Q C + + E G ++ AVN+SA Sbjct: 1324 VINQSCQQLAEWNELGFSDISMAVNLSARQLKADIISTIEVALAVSGLPAKALELELTES 1383 Query: 659 XVLVNGDSILESLQQLRAHGFRISLDDFGTGFSSLSYLRRFPVDVIKIDRSFVSEMTPHP 718 ++ N + L +L+A G I++DDFGTG+SSLSYL+RFP+D +KIDR FV ++T P Sbjct: 1384 MIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDP 1443 Query: 719 QGDVLVKAIIELSHNLGLSVVSEGIELQEQFDMLRSLGSDELQGFYISKPVRAGEIRSFL 778 + AII L+H+L L+VV+EG+E QEQ + L G D++QGF +SKP+ A + ++ L Sbjct: 1444 DDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLL 1503 Query: 779 SRK 781 ++ Sbjct: 1504 QQR 1506 >gb|EAI21209.1| unknown [environmental sequence] Length = 1500 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/423 (39%), Positives = 232/423 (54%), Gaps = 1/423 (0%) Query: 360 LDPLTHLPNRSLFFAKLNAAIGAAKGSNRQIALVFIDLDHFKTVNDTLGHDFGDAMLQEI 419 D LT LPNR+LF +LN AI A SN +AL+F+DLD FK +ND++GH GD +L+ + Sbjct: 1076 FDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAV 1135 Query: 420 AFRLTQAVGTHDVVSRLGGDEFTILLSDIPDSAAISAQLSNIQDALSMPHQIQGHLFYCT 479 A RL AV D V+RLGGDEFTI+L + + A + + A P + + Sbjct: 1136 AHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLTIS 1195 Query: 480 ASIGISIYPQNGDDADYLVKQADLAMLHVKGTGRNNIFQYSEDLEESIRRKKVXXXXXXX 539 SIGIS+YP + +D D L+K AD AM H K GRNN Y+ L E R Sbjct: 1196 TSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHVQLEAGLKQ 1255 Query: 540 XXXNAEFEVHYQPILNAERLQVHKVEALLRWTSPIYGPVSPAEFIPLAETSGSIVSIGGW 599 E + YQP + + +EALLRW GP+SPAEFIPLAE +G I IG W Sbjct: 1256 AISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEETGIINQIGHW 1315 Query: 600 VLRQVCADMRRFRESGLF-LTAAVNISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 658 V+ C + + E G ++ AVN+SA Sbjct: 1316 VINHACQQLAEWSELGFGDISMAVNLSARQLKADIISSIEVALAVSGLPAKALELELTES 1375 Query: 659 XVLVNGDSILESLQQLRAHGFRISLDDFGTGFSSLSYLRRFPVDVIKIDRSFVSEMTPHP 718 ++ N + L +L+A G I++DDFGTG+SSLSYL+RFP+D +KIDR FV ++T P Sbjct: 1376 MIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDP 1435 Query: 719 QGDVLVKAIIELSHNLGLSVVSEGIELQEQFDMLRSLGSDELQGFYISKPVRAGEIRSFL 778 + AII L+H+L L+VV+EG+E QEQ + L G D++QGF +SKP+ A + + L Sbjct: 1436 DDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCLALL 1495 Query: 779 SRK 781 ++ Sbjct: 1496 QQR 1498 >ref|NP_421888.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] pir||D87632 sensory box/GGDEF family protein [imported] - Caulobacter crescentus gb|AAK25056.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] Length = 748 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 166/419 (39%), Positives = 233/419 (55%), Gaps = 4/419 (0%) Query: 361 DPLTHLPNRSLFFAKLNAAIGAAKGSNRQIALVFIDLDHFKTVNDTLGHDFGDAMLQEIA 420 DPLT LPNR LF L A+ +A+ F+DLD FKTVNDTLGH GDA+L+ A Sbjct: 282 DPLTDLPNRVLFQKSLGEALARRSRKGDALAVHFVDLDRFKTVNDTLGHPLGDALLKIAA 341 Query: 421 FRLTQAVGTHDVVSRLGGDEFTILLSDIPDSAAISAQLSNIQDALSMPHQIQGHLFYCTA 480 RL V D V+RLGGDEF I+ + + DS + + I +A++ P +QGH A Sbjct: 342 ERLRGCVREGDTVARLGGDEFAIVQTGLDDSNGATRLAARIVEAMAAPFDLQGHHVVIGA 401 Query: 481 SIGISIYPQNGDDADYLVKQADLAMLHVKGTGRNNIFQYSEDLEESIRRKKVXXXXXXXX 540 S+G+S+ P +GDDAD L+K+AD+A+ K GR + ++E ++ ++ Sbjct: 402 SVGVSLAPTDGDDADELLKKADMALYRAKADGRGAYHFFERAMDEQLQARRALELDLRRA 461 Query: 541 XXNAEFEVHYQPILNAERLQVHKVEALLRWTSPIYGPVSPAEFIPLAETSGSIVSIGGWV 600 EFE+ YQP+ + +V EALLRW P G VSPA+FIPLAE G IV +G WV Sbjct: 462 LQAGEFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPADFIPLAEEIGLIVQLGEWV 521 Query: 601 LRQVCADMRRFRESGLFLTAAVNISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 660 LR+ CA+ + E + AVN+S V Sbjct: 522 LRRACAEAANWPE---HVRLAVNLSPAQFRDRGLVRTVVSALAASGLPAQRLELEITESV 578 Query: 661 LV-NGDSILESLQQLRAHGFRISLDDFGTGFSSLSYLRRFPVDVIKIDRSFVSEMTPHPQ 719 L+ + + + L L+A G RIS+DDFGTG+SSLSYLR FP D IKID++FV ++ Sbjct: 579 LLQDSQANMTMLHDLKALGVRISMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRDILHDSD 638 Query: 720 GDVLVKAIIELSHNLGLSVVSEGIELQEQFDMLRSLGSDELQGFYISKPVRAGEIRSFL 778 ++KA+++L ++G+ +EG+E Q Q D LR G E+QG++IS+P A EI L Sbjct: 639 AMAIIKAVLDLGASMGVVTTAEGVETQAQLDALRQQGCAEIQGYFISRPAPASEIAKML 697 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 984,924,905 Number of extensions: 37225106 Number of successful extensions: 91384 Number of sequences better than 1.0e-05: 2762 Number of HSP's gapped: 89044 Number of HSP's successfully gapped: 3327 Length of query: 788 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 654 Effective length of database: 393,414,312 Effective search space: 257292960048 Effective search space used: 257292960048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)