BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0006.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_466158.1| weakly similar to E. coli MenA protein [Listeri... 204 2e-51 ref|NP_472113.1| weakly similar to E. coli MenA protein [Listeri... 204 2e-51 ref|ZP_00035522.1| COG1575: 1,4-dihydroxy-2-naphthoate octapreny... 147 4e-34 ref|NP_816851.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferas... 140 4e-32 ref|NP_267819.1| hypothetical protein L112353 [Lactococcus lacti... 130 5e-29 >ref|NP_466158.1| weakly similar to E. coli MenA protein [Listeria monocytogenes EGD-e] pir||AC1404 E. coli MenA protein homolog lmo2635 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00713.1| lmo2635 [Listeria monocytogenes] Length = 319 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 171/317 (53%), Gaps = 2/317 (0%) Query: 4 NVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNY 63 ++ SFL+ VE+ TK+AS+ PF+LGTL+ +Y+++ F + ++F S+L FD+ TTAINNY Sbjct: 2 SIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNY 61 Query: 64 YDYKKAAKTHGYGYET-HNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 DY+KA H Y Y T N I ++ T T Sbjct: 62 MDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFIATGLGVWLVFRTDLLVLLI 121 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWA 181 Y+FGP+P+SRMPLGE+FSG+ MGF I F++ Y+++ D + LL+ Sbjct: 122 GFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMV 181 Query: 182 SLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFR 241 ++ ++ E++ + S+P I IA IMLANN+CD+++D+ N RYTLP YIGRK +LLF Sbjct: 182 TIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFN 241 Query: 242 LLYYISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLM 301 LYY SF F ++Q K+ TF++ ++NF+L+ Sbjct: 242 TLYYASFLAVVVSVAINFLHPIMLLSLITIYPVYRNLVKFNKEQVKSKTFVIGIRNFVLI 301 Query: 302 SVARIAVLGAAILLKVL 318 + ++ +++L+ L Sbjct: 302 NATLTILMAVSVVLQQL 318 >ref|NP_472113.1| weakly similar to E. coli MenA protein [Listeria innocua] pir||AB1780 weakly E. coli MenA protein homolog lin2784 [imported] - Listeria innocua (strain Clip11262) emb|CAC98010.1| lin2784 [Listeria innocua] Length = 319 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 170/317 (53%), Gaps = 2/317 (0%) Query: 4 NVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNY 63 ++ SFL+ VE+ TK+AS+ PF+LG L+ +Y+++ F + + F S+L FD+ TTAINNY Sbjct: 2 SISSFLKLVEIQTKIASVFPFMLGVLFVVYQYDMFKPINTLIFFGSMLIFDLTTTAINNY 61 Query: 64 YDYKKAAKTHGYGYE-THNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 DY+KA H Y Y T N I ++ E T T Sbjct: 62 MDYRKATDNHDYDYRTTSNVIGQQQIPERTVIITIFLMFFIATGLGVWLVFRTDLLVLLI 121 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWA 181 Y+FGP+P+SRMPLGE+FSG+ MGF I F++ Y+++ D + LL+ Sbjct: 122 GFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMV 181 Query: 182 SLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFR 241 ++ ++ E++ + S+P I IA IMLANN+CD+++D+ N RYTLP YIGRK +LLF Sbjct: 182 TIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFN 241 Query: 242 LLYYISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLM 301 LYY SF F ++Q K+ TF++ ++NF+L+ Sbjct: 242 ALYYASFLAVVVSVFIHFLHPIMLVSVLAVYPVYRNLVKFNKEQVKSKTFVIGIRNFVLI 301 Query: 302 SVARIAVLGAAILLKVL 318 + ++ +++++ L Sbjct: 302 NATLTILMAVSVVIQQL 318 >ref|ZP_00035522.1| COG1575: 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Enterococcus faecium] Length = 317 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 3 VNVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINN 62 + +K FL+ VE+ TKVAS+ PF +G L+++ F + + L L F+ +L FD+ATTAINN Sbjct: 1 MTLKIFLEVVEIRTKVASVFPFAVGVLFSIAFFHEIHWLNTFLFFIGMLVFDLATTAINN 60 Query: 63 YYDYKKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 Y DY+KA + Y YE N I L T Sbjct: 61 YMDYEKA-HSEVYKYE-ENVIGRRNLSPVLIRNMILAMIAFVFVIGVILTINTGWLLLLM 118 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIH---SDQTVVTLLFSEG 179 Y+FGPIP+SRMPLGE+FSG+ MG I + Y++ SD +T+ FS G Sbjct: 119 GFICCFIGVFYTFGPIPLSRMPLGEIFSGVTMGLGIFAMVVYVNTFGSDVYDLTVNFSSG 178 Query: 180 WASLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLL 239 +L ++ + + S+P + IA IMLANN+ D++ D++N RYTL YIGR +L Sbjct: 179 QFALVGNLWAIAAIVLASLPLVFTIANIMLANNLRDLDRDIENHRYTLVFYIGRPAGTVL 238 Query: 240 FRLLYYISF 248 F+LL Y + Sbjct: 239 FQLLMYACY 247 >ref|NP_816851.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative [Enterococcus faecalis V583] gb|AAO82921.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative [Enterococcus faecalis V583] Length = 315 Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 7/246 (2%) Query: 1 MPVNVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAI 60 M +NV FL+ VE+ TK+AS+ PF++G L+++ F + + F+ ++ FDMATTAI Sbjct: 1 MSLNV--FLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWGNTLVFFIGMVVFDMATTAI 58 Query: 61 NNYYDYKKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXX 120 NNY D+KKA K+ Y YE N I + +T Sbjct: 59 NNYMDFKKA-KSDVYKYE-ENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFL 116 Query: 121 XXXXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIH---SDQTVVTLLFS 177 Y++GPIP+SRMPLGE+FSG MG I ++ Y++ + +T+ F+ Sbjct: 117 VLGGICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLTVYLNVVTNPPFYLTVDFA 176 Query: 178 EGWASLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNAL 237 G L ++ VL + S+P + IA IMLANN+ D++ D++N RYTL YIGR + + Sbjct: 177 SGAFRLDGNLWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPSGI 236 Query: 238 LLFRLL 243 +LF++L Sbjct: 237 VLFQVL 242 >ref|NP_267819.1| hypothetical protein L112353 [Lactococcus lactis subsp. lactis] pir||G86832 hypothetical protein yrbC [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK05761.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis] Length = 319 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 3 VNVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINN 62 +++K+FL+ VE+ TK+AS+ P+++G L++L F+ + L +++L FDM TAINN Sbjct: 1 MSLKNFLELVEIKTKIASIFPYIIGLLFSLSYFKMINIGLSLLFLIAMLLFDMTVTAINN 60 Query: 63 YYDYKKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 Y D+KKA K Y + N I L Sbjct: 61 YQDFKKA-KDEDYK-KQENIIGQANLSTRLVASIILFMLILSLFLGFLLAYFVGWLFFIL 118 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHSDQTVV---TLLFSEG 179 Y++GPIP+SRMPLGE+FSG MGF I + I+S Q+ + L F+ Sbjct: 119 GGIVFFIGVFYTYGPIPLSRMPLGEIFSGGTMGFGIFAMIILINSAQSPIFNLNLDFTND 178 Query: 180 WASLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLL 239 S I + + S+P I IA IMLANN+ D++ D+ N RYTL YIGR N + L Sbjct: 179 SFSFTGSIFAAIAMIIASLPLIFTIANIMLANNLRDLDSDIKNHRYTLVYYIGRPNGIKL 238 Query: 240 FRLLYYISF 248 F+LL Y S+ Sbjct: 239 FQLLMYSSY 247 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 339,954,795 Number of extensions: 11444095 Number of successful extensions: 35518 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 35462 Number of HSP's successfully gapped: 40 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)