BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0003.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781307.1| transporter [Clostridium tetani E88] >gi|282028... 343 2e-93 ref|NP_561800.1| probable ABCtransporter [Clostridium perfringen... 331 1e-89 ref|NP_622501.1| ABC-type multidrug transport system, ATPase com... 196 4e-49 ref|NP_126694.1| ABC transporter, ATP-binding protein [Pyrococcu... 181 1e-44 ref|NP_972293.1| ABC transporter, ATP-binding protein [Treponema... 181 2e-44 >ref|NP_781307.1| transporter [Clostridium tetani E88] gb|AAO35244.1| transporter [Clostridium tetani E88] Length = 262 Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 159/246 (64%), Positives = 209/246 (84%) Query: 1 MNYSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADG 60 M+Y + VL+GI+L+V +G+IIGYIGPNGAGKSTTVKIMLGLV+GY G V+IFG +I++ Sbjct: 16 MSYGSKEVLKGINLDVKKGEIIGYIGPNGAGKSTTVKIMLGLVKGYEGEVKIFGNNISND 75 Query: 61 DAAYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDM 120 + YKR+IGYVPE E+YD+LTA EY+TF+GE+Y M+ E + KA++LM L ++K+Y Sbjct: 76 NVEYKRKIGYVPENGEIYDNLTAYEYVTFLGEIYDMELEEINNKAKKLMSLFGIEKSYHS 135 Query: 121 RIASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYS 180 RI+SYSKGM+QK+L+ISS++H+PDILFLDEPLSGLDANSV+V KE+ + LA++GKTIFYS Sbjct: 136 RISSYSKGMRQKLLIISSLIHNPDILFLDEPLSGLDANSVLVFKEVLSKLASEGKTIFYS 195 Query: 181 SHIMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLTGFDKYRDIAGEF 240 SHIM+VVEKISSRIIL+N G I AD TF +L+++N EGSLE IFNQ+TGF K+ +IA EF Sbjct: 196 SHIMEVVEKISSRIILLNNGQIAADDTFEELKKKNMEGSLEQIFNQITGFTKHEEIANEF 255 Query: 241 VAVLGE 246 +++L E Sbjct: 256 ISILKE 261 >ref|NP_561800.1| probable ABCtransporter [Clostridium perfringens] dbj|BAB80590.1| probable ABCtransporter [Clostridium perfringens str. 13] Length = 271 Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 153/244 (62%), Positives = 207/244 (84%) Query: 1 MNYSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADG 60 MN+ + VL+GI+L++++G+IIGYIG NGAGKSTTVKIMLG++ GYTGTV IFG +I G Sbjct: 23 MNFGTKEVLKGINLDIHKGEIIGYIGTNGAGKSTTVKIMLGIISGYTGTVEIFGENILKG 82 Query: 61 DAAYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDM 120 D +YKR+IGYVPE+A++YD+LTA+EYLTF+G+LYGM+ + K+++LM +L ++ Y+ Sbjct: 83 DGSYKRKIGYVPEMADIYDTLTAKEYLTFMGQLYGMEYKDVLYKSKQLMKILGIEDVYNS 142 Query: 121 RIASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYS 180 RI+S+SKGM+QKVLLISS++H+PDILFLDEPL+GLDANSVMV+KEI + LA GKTIFYS Sbjct: 143 RISSFSKGMRQKVLLISSLIHNPDILFLDEPLNGLDANSVMVIKEILSELARNGKTIFYS 202 Query: 181 SHIMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLTGFDKYRDIAGEF 240 SHI+DVVEKIS RIIL+N G + ADG+F +L++ + E SLE+IFN LTGF+ ++ +A EF Sbjct: 203 SHIIDVVEKISHRIILLNNGVVAADGSFEELKKISNEESLEEIFNDLTGFNDHKRLAEEF 262 Query: 241 VAVL 244 A++ Sbjct: 263 TALI 266 >ref|NP_622501.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM24105.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 245 Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 145/218 (66%) Query: 11 GIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGDAAYKRRIGY 70 G++L V G+I G++GPNGAGK+TT+K+++G+++ G + + G DI K++IGY Sbjct: 26 GLNLVVNPGEIFGFLGPNGAGKTTTIKMIVGILKPDEGEILVDGIDIQKNPIEAKKKIGY 85 Query: 71 VPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMRIASYSKGMK 130 VP+ +YD LT EYL FI ++YG+ E K E +++ LK A I SYS GMK Sbjct: 86 VPDEPYIYDKLTGLEYLNFIADVYGISEKERREKLEYFLEIFELKNAIGDLIQSYSHGMK 145 Query: 131 QKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSSHIMDVVEKI 190 QK+L+ +++LH P + LDEP++GLD S ++KE+ A+ G T+F+S+HI++V E++ Sbjct: 146 QKLLITAALLHSPSVWILDEPMTGLDPRSSFLLKELMANHTKAGFTVFFSTHILEVAERL 205 Query: 191 SSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLT 228 RI +IN G IVA GT ++++Q+ SLE IF +LT Sbjct: 206 CDRIAIINKGKIVACGTMEEIKKQHEWESLEKIFLELT 243 >ref|NP_126694.1| ABC transporter, ATP-binding protein [Pyrococcus abyssi] pir||H75077 abc transporter, ATP-binding protein PAB1696 - Pyrococcus abyssi (strain Orsay) emb|CAB49925.1| ABC transporter, ATP-binding protein, unknown substrate [Pyrococcus abyssi] Length = 253 Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 144/227 (63%) Query: 2 NYSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGD 61 + + VL+GI V G+I G +GPNG+GKSTT++I+ G++ + G V + G ++A Sbjct: 10 RFGGKEVLKGISFTVKDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVIVGGVEVAKDP 69 Query: 62 AAYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMR 121 KR +GYVPE LY+SLT E+ +F+G + G+ + + + +L++ +KK + Sbjct: 70 LQVKRIVGYVPETPALYESLTPAEFFSFVGGVRGIPKDILEERVRKLVEAFEIKKYMNQL 129 Query: 122 IASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSS 181 I + S G KQK+ LISS+LHDP +L LDE ++GLD S + +E+ +GK+I +S+ Sbjct: 130 IGTLSFGTKQKISLISSLLHDPKVLILDEAMNGLDPKSARIFRELLYEFKEEGKSIVFST 189 Query: 182 HIMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLT 228 H++ + E I R+ +I G I+A+GT +L+E ++E LED+F +LT Sbjct: 190 HVLALAELICDRVGIIYQGRIIAEGTVEELKEISKEERLEDVFLKLT 236 >ref|NP_972293.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] gb|AAS12204.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] Length = 252 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 138/217 (63%), Gaps = 1/217 (0%) Query: 12 IDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGDAAYKRRIGYV 71 I + V G+I G++GPNGAGK+TT+K++ G++ +G++ + G +IA+ KRRIGYV Sbjct: 22 ISVNVKNGEIFGFLGPNGAGKTTTIKMITGVLNPDSGSIIVDGVNIAEDPMEAKRRIGYV 81 Query: 72 PEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMRIASYSKGMKQ 131 + EL+ L A EYL FIG++YG+ + E+ L + A + I S+S GMKQ Sbjct: 82 TDNPELFSQLKAAEYLNFIGDVYGVSADVRQERIEKYTKLFGINDALNGSIGSFSHGMKQ 141 Query: 132 KVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSSHIMDVVEKIS 191 K+L+ S+L DP + LDEP+ GLD S +KEI A GK +F+S+H+M+V EK+ Sbjct: 142 KLLVTGSLLSDPPVWILDEPMVGLDPKSAFSLKEIMRERADAGKVVFFSTHVMEVAEKLC 201 Query: 192 SRIILINGGDIVADGTFAQLQEQNRE-GSLEDIFNQL 227 R+ +IN G I+ +G+ +L+E+ E SLE +F +L Sbjct: 202 DRLAIINAGKIMFEGSLQELREKRGENASLEKLFLEL 238 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 357,368,379 Number of extensions: 14408064 Number of successful extensions: 104036 Number of sequences better than 1.0e-05: 18475 Number of HSP's gapped: 89803 Number of HSP's successfully gapped: 19733 Length of query: 251 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 128 Effective length of database: 423,280,401 Effective search space: 54179891328 Effective search space used: 54179891328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)