BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0066.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390175.1| similar to hypothetical proteins [Bacillus subt... 201 8e-51 ref|NP_692728.1| hypothetical protein OB1807 [Oceanobacillus ihe... 169 5e-41 ref|NP_242491.1| BH1625~unknown conserved protein [Bacillus halo... 167 1e-40 pir||T44629 hypothetical protein [imported] - Bacillus firmus (f... 154 1e-36 pir||T44769 hypothetical protein [imported] - Bacillus subtilis ... 140 2e-32 >ref|NP_390175.1| similar to hypothetical proteins [Bacillus subtilis] sp|P50738|YPDC_BACSU Hypothetical protein ypdC pir||B69934 conserved hypothetical protein ypdC - Bacillus subtilis gb|AAC83956.1| putative [Bacillus subtilis] emb|CAB14210.1| ypdC [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 106/207 (51%), Positives = 147/207 (71%), Gaps = 4/207 (1%) Query: 1 VAPGLALLTFFYLKDKYDQEPLHMVLKVFLLGLLIVFPIMIIQRGLVL-GLDGGPYVDSF 59 +APG+ALL++FYLKD+YD EP+HMVL+ F LG+++VFPIM IQ L + GG + SF Sbjct: 9 IAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPIMFIQYVLEKENVGGGSFFVSF 68 Query: 60 LISSGVEECLKWFVLYHMIYNHTEFDEPYDGILYAVAISLGFATIENIMYAWYSHASIGS 119 L S +EE LKWF+L +Y H FDE YDGI+Y ++SLGFAT+ENI+Y H + Sbjct: 69 LSSGFLEESLKWFILMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYL-IGHG-VEH 126 Query: 120 MFMRALLPVSGHAMFGVIMGYHMGRAKFSGGVRTRGILFMSLLLPWLWHGIYDFILSTMT 179 F+RALLPVS HA+ GVIMG+++G+A+FS L +SL++P L HG YDFIL+ ++ Sbjct: 127 AFVRALLPVSCHALIGVIMGFYLGKARFSADKARVKWLTLSLVVPSLLHGSYDFILTALS 186 Query: 180 NTWIWFIVPLMAVLWYGGMGKVARANS 206 N WI++++P M LW+ G+ K +A S Sbjct: 187 N-WIYYMLPFMVFLWWFGLRKAKKARS 212 >ref|NP_692728.1| hypothetical protein OB1807 [Oceanobacillus iheyensis HTE831] dbj|BAC13763.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 215 Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 137/209 (65%), Gaps = 6/209 (2%) Query: 1 VAPGLALLTFFYLKDKYDQEPLHMVLKVFLLGLLIVFPIMIIQRGLVLGLD-GGPYVDSF 59 +AP LALL++ YLKDK EP+ +++++F+LG L+V PIM IQ + + ++++F Sbjct: 9 IAPALALLSYIYLKDKI-TEPIWLIIRMFILGALLVLPIMFIQYAISSEFNYDSIFIEAF 67 Query: 60 LISSGVEECLKWFVLYHMIYNHTEFDEPYDGILYAVAISLGFATIENIMYAWYSHASIGS 119 + +EE KWFV +IY H EFD YDGI+YA ++SLGFA+IENI+Y + I Sbjct: 68 FQIALLEEFFKWFVFMFVIYQHEEFDNHYDGIVYASSLSLGFASIENILYLITN--GIEY 125 Query: 120 MFMRALLPVSGHAMFGVIMGYHMGRAKFSGGVRTRGILFMSLLLPWLWHGIYDFILSTMT 179 F+RA+ PVS HA+FG+IMGY++G+AK + + L ++ LLP+L HGIY+FIL + Sbjct: 126 AFLRAVFPVSSHALFGIIMGYYLGKAKTHTNYKKKN-LTLAFLLPFLLHGIYNFILKGFS 184 Query: 180 NTWIWFIVPLMAVLWYGGMGKVARANSRS 208 ++ + P M +LW + ++ RAN + Sbjct: 185 -SFTLILTPFMVLLWIIALYRLKRANENT 212 >ref|NP_242491.1| BH1625~unknown conserved protein [Bacillus halodurans] pir||A83853 hypothetical protein BH1625 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05344.1| BH1625~unknown conserved protein [Bacillus halodurans] Length = 215 Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 134/207 (64%), Gaps = 4/207 (1%) Query: 1 VAPGLALLTFFYLKDKYDQEPLHMVLKVFLLGLLIVFPIMIIQRG-LVLGLDGGPYVDSF 59 +AP +ALL FFYLK++Y + L V++ FL+G L++FP+M++Q L G P + +F Sbjct: 9 IAPAMALLCFFYLKNEYGSQTLGFVVRTFLIGALLMFPVMVLQHAFLAEGFFANPLLKAF 68 Query: 60 LISSGVEECLKWFVLYHMIYNHTEFDEPYDGILYAVAISLGFATIENIMYAWYSHASIGS 119 ++ EE KWF+LY Y H EF+ YDGI++ V++SLGFA++EN +Y + + + Sbjct: 69 ILYGFFEEFFKWFMLYFFAYKHVEFNRRYDGIIFGVSLSLGFASMENGLYLIAN--GVET 126 Query: 120 MFMRALLPVSGHAMFGVIMGYHMGRAKFSGGVRTRGILFMSLLLPWLWHGIYDFILSTMT 179 RALLPVS HA++GVIMGY++GRAK R + ++ +SL LP L H +YD IL + Sbjct: 127 ALGRALLPVSSHAIYGVIMGYYLGRAKMEEKHRKKWLV-LSLFLPVLLHSLYDAILLLWS 185 Query: 180 NTWIWFIVPLMAVLWYGGMGKVARANS 206 +++ +VP M VLW+ + KV AN Sbjct: 186 KHFLFVMVPFMLVLWWVAIQKVKLANQ 212 >pir||T44629 hypothetical protein [imported] - Bacillus firmus (fragment) gb|AAB41687.1| hydrophobic protein [Bacillus firmus] Length = 201 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 128/205 (62%), Gaps = 8/205 (3%) Query: 5 LALLTFFYLKDKYDQEPLHMVLKVFLLGLLIVFPIMIIQRGLVL-GLDGGPYVDSFLISS 63 +ALL++FYL+++Y+ +V + F++GL++VFP+M++Q GL +F++ Sbjct: 1 MALLSYFYLRNEYESTVNALVFRTFIIGLILVFPVMVLQYAFTAEGLLQAGLSQAFILYG 60 Query: 64 GVEECLKWFVLYHMIYNHTEFDEPYDGILYAVAISLGFATIENIMY--AWYSHASIGSMF 121 EE KWF+LY Y + + YDGI+Y V++SLGFA++EN+ Y A ++G Sbjct: 61 FFEEFFKWFMLYFFAYQYGQMKRRYDGIVYGVSLSLGFASMENVFYILAHGLETAVG--- 117 Query: 122 MRALLPVSGHAMFGVIMGYHMGRAKFSGGVRTRGILFMSLLLPWLWHGIYDFILSTMTNT 181 RALLPVS HA++GVIMGY++GRAK R + L +SLL+P + HG+YDFIL T Sbjct: 118 -RALLPVSSHALYGVIMGYYLGRAKMENTKRKQ-FLLLSLLIPVMLHGVYDFILLTFDMY 175 Query: 182 WIWFIVPLMAVLWYGGMGKVARANS 206 ++ +VP M LW + KV AN Sbjct: 176 FLIGLVPFMVGLWILALNKVKWANK 200 >pir||T44769 hypothetical protein [imported] - Bacillus subtilis (fragment) dbj|BAA11472.1| unnamed protein product [Bacillus subtilis] Length = 156 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 103/149 (69%), Gaps = 3/149 (2%) Query: 58 SFLISSGVEECLKWFVLYHMIYNHTEFDEPYDGILYAVAISLGFATIENIMYAWYSHASI 117 SFL S +EE LKWF+L +Y H FDE YDGI+Y ++SLGFAT+ENI+Y H + Sbjct: 5 SFLSSGFLEESLKWFILMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYL-IGHG-V 62 Query: 118 GSMFMRALLPVSGHAMFGVIMGYHMGRAKFSGGVRTRGILFMSLLLPWLWHGIYDFILST 177 F+RALLPVS HA+ GVIMG+++G+A+FS L +SL++P L HG YDFIL+ Sbjct: 63 EHAFVRALLPVSCHALIGVIMGFYLGKARFSADKARVKWLTLSLVVPSLLHGSYDFILTA 122 Query: 178 MTNTWIWFIVPLMAVLWYGGMGKVARANS 206 ++N WI++++P M LW+ G+ K +A S Sbjct: 123 LSN-WIYYMLPFMVFLWWFGLRKAKKARS 150 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.146 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,084,001 Number of extensions: 14458937 Number of successful extensions: 50982 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 50868 Number of HSP's successfully gapped: 66 Length of query: 221 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 100 Effective length of database: 428,710,599 Effective search space: 42871059900 Effective search space used: 42871059900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 123 (52.0 bits)