BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0056.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242505.1| BH1639~unknown conserved protein [Bacillus halo... 143 3e-33 ref|NP_623216.1| conserved hypothetical protein [Thermoanaerobac... 103 2e-21 ref|ZP_00145023.1| Hypothetical Membrane Spanning Protein [Fusob... 101 9e-21 ref|NP_603434.1| Hypothetical membrane-spanning protein [Fusobac... 100 1e-20 ref|NP_923609.1| hypothetical protein gll0663 [Gloeobacter viola... 96 4e-19 >ref|NP_242505.1| BH1639~unknown conserved protein [Bacillus halodurans] sp|Q9KCD3|YG39_BACHD Hypothetical UPF0078 protein BH1639 pir||G83854 hypothetical protein BH1639 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05358.1| BH1639~unknown conserved protein [Bacillus halodurans] Length = 206 Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 107/178 (60%), Gaps = 5/178 (2%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKG-IXXXXXXXXXXXXXXXXX 83 + +K VDIRQ+GSGNAGATNTLRV+G GPA+ VL+LD+LKG I Sbjct: 25 KKIKKVDIRQHGSGNAGATNTLRVLGVGPAVTVLLLDILKGVIAVVVTVQLTPDGDGWFA 84 Query: 84 XXXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLG 143 HNWP+Y+ FRGGKG+ATTIGV+A+LV T+YVSLG Sbjct: 85 AAAGIAAIIGHNWPIYYGFRGGKGVATTIGVLASLVPLAAVLAGVIAIGSIVWTRYVSLG 144 Query: 144 SLLFVALTPVFLI----FTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSK 197 SLLFV LT + + + G+ ++ ++I+AI + WRHRSNI ++ G ENK+G K Sbjct: 145 SLLFVTLTALLVAVLSQWFGYPVAYIYLTIIVAILSMWRHRSNIQRLLSGTENKLGRK 202 >ref|NP_623216.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] sp|Q8R9J2|YG18_THETN Hypothetical UPF0078 protein TTE1618 gb|AAM24820.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] Length = 198 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 2/172 (1%) Query: 28 KGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXXXXX 87 + +DIR YGSGNAGATN LRV+G A V +LDVLKG+ Sbjct: 27 RNIDIRNYGSGNAGATNVLRVLGPKAAAPVFVLDVLKGV--VAVLLGKYFIGMPGALIAG 84 Query: 88 XXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGSLLF 147 HNWP++ FRGGKG+AT++GV+ T+ T+YVSLGS+ Sbjct: 85 IAVVCGHNWPIFLKFRGGKGVATSVGVVMTINPLLGLIALAIGVAVIAITRYVSLGSMTG 144 Query: 148 VALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSKVK 199 + IF + L ++++A+ ++HRSNI ++ G E+KIG + + Sbjct: 145 AITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196 >ref|ZP_00145023.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23381.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 194 Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 1/169 (0%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84 + KG+D+R YGS N+GATN+ RV+G I VLI+DVLKG Sbjct: 24 KAFKGIDVRDYGSKNSGATNSYRVLGAKLGIAVLIIDVLKGF-IPLYIASKFNLAYNDLV 82 Query: 85 XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGS 144 H + + F+GGKG+AT++GV L TKY+SLGS Sbjct: 83 ILGLVAILAHTFSCFISFKGGKGVATSLGVFLFLAPVITLILLVIFILVVYFTKYISLGS 142 Query: 145 LLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENK 193 + L P+F FT + S+IIAIF +RH++NI ++ G ENK Sbjct: 143 ITAAFLLPIFTFFTHRDSYLFALSVIIAIFVIYRHKTNISRLLSGTENK 191 >ref|NP_603434.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] sp|Q8RFY9|Y537_FUSNN Hypothetical UPF0078 protein FN0537 gb|AAL94733.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 194 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 84/169 (49%), Gaps = 1/169 (0%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84 + KGVD+R YGS N+GATN+ RV+G + VLI+DVLKG Sbjct: 24 KAFKGVDVRDYGSKNSGATNSYRVLGAKLGVAVLIMDVLKGF-IPLYIASKFNLVYNDLV 82 Query: 85 XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGS 144 H + + F+GGKG+AT++GV L+ TKYVSL S Sbjct: 83 ILGLVAILAHTFSCFISFKGGKGVATSLGVFLFLIPVITLILLAIFILVAYFTKYVSLAS 142 Query: 145 LLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENK 193 + L P+F FT + S+IIA+F +RH++NI ++ G ENK Sbjct: 143 ITAAFLLPIFTFFTHKDSYLFALSVIIAVFVIYRHKTNISRLLSGTENK 191 >ref|NP_923609.1| hypothetical protein gll0663 [Gloeobacter violaceus] dbj|BAC88604.1| gll0663 [Gloeobacter violaceus PCC 7421] Length = 205 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXX---XXXXX 81 R LK +DIR++GSG+ GATN LR +G+GPA VL+ DV KG+ Sbjct: 27 RRLKNIDIREFGSGSTGATNVLRTLGRGPAAAVLLFDVFKGLFAVWLARTLAGGEDAGAW 86 Query: 82 XXXXXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXX-XXXXXXTKYV 140 H+WP++ FRGGK +A ++G++ + WP T+ V Sbjct: 87 IVLGAGLAAIVGHSWPVWLAFRGGKSVAVSVGLLLGM-HWPVALTVAAVWGVCFAVTRIV 145 Query: 141 SLGSLLFVALTPVFLIFTGFTAP---ELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSK 197 S S++ A TP L F + AP L+G L+ I+ WRHR NI ++ QG E KIG Sbjct: 146 SFASIVAAAATP--LCFYLWRAPLPFTLFG-LLGGIYIVWRHRGNIERLLQGTEPKIGDP 202 Query: 198 VKE 200 Sbjct: 203 AAH 205 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.144 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 211,331,009 Number of extensions: 6054668 Number of successful extensions: 17012 Number of sequences better than 1.0e-05: 265 Number of HSP's gapped: 16644 Number of HSP's successfully gapped: 269 Length of query: 205 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 85 Effective length of database: 431,425,698 Effective search space: 36671184330 Effective search space used: 36671184330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)