BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0042.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB41844.1| 4-hydroxybenzoate octaprenyltransferase 285 6e-76 ref|NP_242516.1| 4-hydroxybenzoate octaprenyltransferase [Bacill... 285 8e-76 ref|ZP_00080298.1| COG0382: 4-hydroxybenzoate polyprenyltransfer... 248 2e-64 ref|NP_951498.1| 4-hydroxybenzoate octaprenyltransferase, putati... 246 6e-64 ref|NP_213024.1| 4-hydroxybenzoate octaprenyltransferase [Aquife... 195 1e-48 >gb|AAB41844.1| 4-hydroxybenzoate octaprenyltransferase Length = 277 Score = 285 bits (730), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 146/275 (53%), Positives = 187/275 (68%) Query: 11 MIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAMGLNRLIDRFS 70 MIKFEHTVFALPFA+ GA+LGS ++ P+ Q WI VAM GARSAAM LNR+ID Sbjct: 1 MIKFEHTVFALPFAYFGAMLGSFIVNETWPTLMQWVWITVAMVGARSAAMSLNRVIDEKI 60 Query: 71 DAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPIAVFLLVFYSF 130 D NPRTA RAIPAGL+ EV +LN L+ LLP+AVF LV YS+ Sbjct: 61 DKYNPRTADRAIPAGLISKIEVMFFIIISFAMLIYAAFQLNQLAVYLLPLAVFFLVIYSY 120 Query: 131 TKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFDIIYSCQDVEF 190 TKRFTWACHLILG+TIALAPL + V + + WT GFD+IY+ QD ++ Sbjct: 121 TKRFTWACHLILGITIALAPLGGWVAVTGSVSFEAFVLFTAVALWTTGFDVIYATQDADY 180 Query: 191 DKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGMLIAYIILFYE 250 D++ GLYSIP RFG+ +AL +AK+FH+++ F L IT LSW Y+ G++IA +I+ YE Sbjct: 181 DRERGLYSIPSRFGIRKALILAKLFHVISFAAFFLLFLITPLSWLYLIGVIIAGLIMIYE 240 Query: 251 HHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDL 285 H +VS DLS++ AFFTMNG+LS+V+F FT+ D+ Sbjct: 241 HSLVSADDLSKVGVAFFTMNGILSLVMFIFTVGDV 275 >ref|NP_242516.1| 4-hydroxybenzoate octaprenyltransferase [Bacillus halodurans] pir||B83856 4-hydroxybenzoate octaprenyltransferase BH1650 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05369.1| 4-hydroxybenzoate octaprenyltransferase [Bacillus halodurans] Length = 277 Score = 285 bits (729), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 187/277 (67%) Query: 11 MIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAMGLNRLIDRFS 70 MIKFEHTVFALPFA+ G +LGS V+ G PS WI +AM GARSAAM LNR+ID Sbjct: 1 MIKFEHTVFALPFAYFGMILGSHVVLGHWPSLTTWIWITLAMVGARSAAMSLNRVIDWKI 60 Query: 71 DAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPIAVFLLVFYSF 130 D NPRTAGRAIPAGL+ EVS +LN L+ LLP+AVF LV YS+ Sbjct: 61 DKGNPRTAGRAIPAGLVSRVEVSIFIIVSFVLLFVAAFQLNILAVYLLPVAVFFLVIYSY 120 Query: 131 TKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFDIIYSCQDVEF 190 TKRFTWACHLILG+TI +APL ++ + + WTAGFD+IY+ QD E+ Sbjct: 121 TKRFTWACHLILGMTIGIAPLGGWVGATGTLSWDALFLFIAVALWTAGFDVIYATQDAEY 180 Query: 191 DKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGMLIAYIILFYE 250 D++ GL SIP RFG+ RAL +AK FH+++ F++L FIT+L W Y G+LIA I+ YE Sbjct: 181 DREHGLNSIPSRFGIKRALLMAKGFHIISFSAFLTLFFITELGWLYFIGVLIAGGIMVYE 240 Query: 251 HHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVV 287 H +V DLS++ AFFTMNG+LS+V+F FTL D+ + Sbjct: 241 HSLVKADDLSKVDVAFFTMNGILSMVLFVFTLGDMFI 277 >ref|ZP_00080298.1| COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Geobacter metallireducens] Length = 298 Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/288 (45%), Positives = 177/288 (61%), Gaps = 4/288 (1%) Query: 1 MLKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAM 60 M KI +FL+MIKF HTVFALPFAF GA+L + +P+ Q+ WI++AM GAR+AAM Sbjct: 11 MFGKIKVFLEMIKFSHTVFALPFAFTGAVLAAR----GVPTAYQVFWILMAMVGARTAAM 66 Query: 61 GLNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPI 120 G+NR+ID DA+NPRTAGRAIPAGL+ G +LNPL L P+ Sbjct: 67 GMNRVIDAEIDARNPRTAGRAIPAGLIGKGTAVAFIVISILLMLYAAYRLNPLCLYLSPV 126 Query: 121 AVFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFD 180 A+F LV YS+ KRFT H++LG+ +A APL +++ ++FW AGFD Sbjct: 127 ALFFLVLYSYCKRFTALAHVVLGICLAAAPLGAWIAIRGTVELPAVLLGLAVLFWVAGFD 186 Query: 181 IIYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGM 240 I+Y+ QD+EFDK GL+SIP R GV +L A++FH+ L L WY+AG+ Sbjct: 187 ILYALQDLEFDKGAGLHSIPSRLGVNGSLWTARLFHVAMAALLAGLYVSAGLGVWYLAGL 246 Query: 241 LIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVVQ 288 + +L YEH ++ DLSRL AFF MNG +SI +F T +D++ + Sbjct: 247 GLCVTMLLYEHWLLRGGDLSRLDAAFFAMNGYISITLFVATFVDVLAR 294 >ref|NP_951498.1| 4-hydroxybenzoate octaprenyltransferase, putative [Geobacter sulfurreducens PCA] gb|AAR33771.1| 4-hydroxybenzoate octaprenyltransferase, putative [Geobacter sulfurreducens PCA] Length = 298 Score = 246 bits (627), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/287 (45%), Positives = 185/287 (64%), Gaps = 6/287 (2%) Query: 1 MLKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAM 60 M KI +FL+MIKF HTVFALPFAF GA+L + +PS Q+ WI++AM GAR+AAM Sbjct: 11 MFAKIRVFLEMIKFSHTVFALPFAFTGAVLAA----DGMPSAHQVFWILMAMVGARTAAM 66 Query: 61 GLNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPI 120 G+NRLID DA+NPRTA RAIPAGL+ G V+ +LNPL L P+ Sbjct: 67 GMNRLIDAEIDARNPRTASRAIPAGLIGTGTVALFIVLSILLMLYAAWQLNPLCLYLSPV 126 Query: 121 AVFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFD 180 A+F L YS+ KRFT H++LG+ +A APL +++ ++FW AGFD Sbjct: 127 ALFFLGLYSYCKRFTSLAHVVLGICLAAAPLGAWIAIRGTVEVPAILLGLAVLFWVAGFD 186 Query: 181 IIYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFIT-DLSWWYVAG 239 I+Y+ QD++FD+ GL+SIPVR GV +L A+VFH++ +G ++ L+++ L W++AG Sbjct: 187 ILYALQDLDFDRASGLHSIPVRLGVNGSLWAARVFHLVM-LGLLAGLYLSAGLGPWFLAG 245 Query: 240 MLIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLV 286 + +L YEH ++ DL++L AFFTMNG +SI +F TL D++ Sbjct: 246 LAATIAMLGYEHWLLRHGDLTKLDAAFFTMNGYISITLFVATLADVL 292 >ref|NP_213024.1| 4-hydroxybenzoate octaprenyltransferase [Aquifex aeolicus] pir||E70304 4-hydroxybenzoate octaprenyltransferase - Aquifex aeolicus gb|AAC06421.1| 4-hydroxybenzoate octaprenyltransferase [Aquifex aeolicus VF5] Length = 284 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 161/288 (55%), Gaps = 11/288 (3%) Query: 1 MLKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAM 60 M+KK+ + +++KFEHT+FALPFA LL + PS +I WI+VA+ AR+ M Sbjct: 1 MMKKVRAYAELVKFEHTIFALPFALASVLL----LAEEFPSLWKIFWILVALVSARTVGM 56 Query: 61 GLNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPI 120 NRLID D NPRT + G + EV LN L+ L P+ Sbjct: 57 AFNRLIDEPYDRLNPRTKNWPLVKGEVSKEEVRKIILVGSILFVFASLMLNFLAFLLSPV 116 Query: 121 AVFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFD 180 +FLL FY KR T+ HL+LGL L P+ +++ + FW AGFD Sbjct: 117 VLFLLWFYPQAKRITYYPHLVLGLVYFLIPVAVDVALNERISLTAVILGIAMAFWVAGFD 176 Query: 181 IIYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFI----TDLSWWY 236 ++Y+ QD EFDK+ GL SIPV++GV +A+ IA++FH +T FVSLL + +L + Y Sbjct: 177 VLYALQDYEFDKEVGLKSIPVKYGVEKAIKIARLFHSIT---FVSLLILGFTHKELGFIY 233 Query: 237 VAGMLIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLID 284 G+ + L YEH ++ P DLS++ AFFT+NG +S++ F LID Sbjct: 234 FLGLFLIAGFLVYEHSLIKPWDLSKINKAFFTVNGWISVIFFIVVLID 281 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.333 0.145 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 361,852,782 Number of extensions: 12957062 Number of successful extensions: 56781 Number of sequences better than 1.0e-05: 318 Number of HSP's gapped: 56444 Number of HSP's successfully gapped: 318 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 125 (52.8 bits)